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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152696 (49 seq.)
>W1710863467
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
966737
966661
-
Arg
TCT
[ENA]
¡û
>W1710864160
LMFQ01000024
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
199929
199853
-
Arg
TCT
[ENA]
¡û
>W1710864497
LMFX01000034
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
82781
82857
+
Arg
TCT
[ENA]
¡û
>W1710865988
LMHC01000024
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
288633
288557
-
Arg
TCT
[ENA]
¡û
>W1710866007
LMHD01000006
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
128491
128415
-
Arg
TCT
[ENA]
¡û
>W1711135239
LUYR01000557
Alphaproteobacteria
Rhodospirillales bacterium Alpha_05 [LUYR]
1586
1510
-
Arg
TCT
[ENA]
¡û
>W131226700
AUEO01000025
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
54253
54177
-
Arg
TCT
[ENA]
¡û
>C171074542
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
1063009
1063085
+
Arg
TCT
-
¡û
>C171074594
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
1071876
1071952
+
Arg
TCT
-
¡û
>C171074646
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
1071625
1071701
+
Arg
TCT
-
¡û
>C171074698
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
1068034
1068110
+
Arg
TCT
-
¡û
>C171074750
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
1071877
1071953
+
Arg
TCT
-
¡û
>C171074802
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
1063069
1063145
+
Arg
TCT
-
¡û
>C009824
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
1063063
1063139
+
Arg
TCT
[Ensembl]
¡û
>C019119
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
1934676
1934752
+
Arg
TCT
[Ensembl]
¡û
>w018486
AATH01000001
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
1314280
1314202
-
Arg
TCT
[ENA]
¡û
>WENV180015871
FSTO01000237
[FSTO] metagenome; soil
112
188
+
Arg
TCT
[ENA]
¢þ
>WENV180024288
FTIG01030225
[FTIG] metagenome; soil
6
82
+
Arg
TCT
[ENA]
¢þ
>WENV180024341
FTIG01160129
[FTIG] metagenome; soil
241
165
-
Arg
TCT
[ENA]
¢þ
>WENV180030624
FTJN01001349
[FTJN] metagenome; soil
1209
1133
-
Arg
TCT
[ENA]
¢þ
>WENV180030706
FTJN01003206
[FTJN] metagenome; soil
47694
47770
+
Arg
TCT
[ENA]
¢þ
>WENV180033708
FTKL01024538
[FTKL] metagenome; soil
54
130
+
Arg
TCT
[ENA]
¢þ
>WENV180033714
FTKL01034187
[FTKL] metagenome; soil
638
562
-
Arg
TCT
[ENA]
¢þ
>w001351
AAAG02000002
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
12879
12806
-
Arg
TCT
[ENA]
¡û
>C08002374
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3274535
3274462
-
Arg
TCT
[Ensembl]
¡û
>WENV170609621
FUWD011451951
[FUWD] metagenome; unknown
127
203
+
Arg
TCT
[ENA]
¢þ
>WENV170711289
LNFM01004373
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11294
11370
+
Arg
TCT
[ENA]
¢þ
>W141779503
JONW01000009
Alphaproteobacteria
Caulobacter sp. UNC358MFTsu5.1 [JONW]
384971
384895
-
Arg
TCT
[ENA]
¡û
>W141815988
JQJN01000030
Alphaproteobacteria
Caulobacter henricii [JQJN]
43907
43831
-
Arg
TCT
[ENA]
¡û
>W141816084
JQJP01000034
Alphaproteobacteria
Caulobacter henricii [JQJP]
38323
38399
+
Arg
TCT
[ENA]
¡û
>W141819051
JQLZ01000007
Alphaproteobacteria
Caulobacter henricii [JQLZ]
59557
59633
+
Arg
TCT
[ENA]
¡û
>W1810069334
PEBF01000001
Alphaproteobacteria
Caulobacter sp. FWC2 [PEBF]
2975736
2975660
-
Arg
TCT
[ENA]
¡û
>W1810073527
PEGG01000365
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
3070
2994
-
Arg
TCT
[ENA]
¡û
>W1810073555
PEGH01000013
Alphaproteobacteria
Caulobacter sp. BP25 [PEGH]
68700
68624
-
Arg
TCT
[ENA]
¡û
>W1810474470
QAII01000029
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
69661
69737
+
Arg
TCT
[ENA]
¡û
>W1810475034
QAIR01000333
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
45363
45439
+
Arg
TCT
[ENA]
¡û
>C151004014
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1096458
1096534
+
Arg
TCT
[Ensembl]
¡û
>C151004089
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2376727
2376651
-
Arg
TCT
[Ensembl]
¡û
>C151004141
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2352829
2352753
-
Arg
TCT
[Ensembl]
¡û
>C11118833
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
1934676
1934752
+
Arg
TCT
[Ensembl]
¡û
>C161049372
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
2113107
2113031
-
Arg
TCT
[Ensembl]
¡û
>W121086763
AKKF01000133
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
1526
1450
-
Arg
TCT
[ENA]
¡û
>W1610725813
LMFD01000010
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
966737
966661
-
Arg
TCT
[ENA]
¡û
>W1610726506
LMFQ01000024
Alphaproteobacteria
Caulobacter sp. Root1455 [LMFQ]
199929
199853
-
Arg
TCT
[ENA]
¡û
>W1610726843
LMFX01000034
Alphaproteobacteria
Caulobacter sp. Root1472 [LMFX]
82781
82857
+
Arg
TCT
[ENA]
¡û
>W1610728334
LMHC01000024
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
288633
288557
-
Arg
TCT
[ENA]
¡û
>W1610728353
LMHD01000006
Alphaproteobacteria
Caulobacter sp. Root656 [LMHD]
128491
128415
-
Arg
TCT
[ENA]
¡û
>W1610946359
LUYR01000557
Alphaproteobacteria
Rhodospirillales bacterium Alpha_05 [LUYR]
1586
1510
-
Arg
TCT
[ENA]
¡û
>W1710565832
FORN01000002
Alphaproteobacteria
Caulobacter sp. UNC279MFTsu5.1 [FORN]
2029
2105
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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