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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152756 (26 seq.)
>W1711188729
LWQS01000037
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
48475
48399
-
Glu
CTC
[ENA]
¡û
>C018825
CP000686
Chloroflexota
Roseiflexus sp. RS-1 [CP000686]
1048740
1048664
-
Glu
CTC
[Ensembl]
¡û
>w019840
AAUM01000010
Chloroflexota
Roseiflexus castenholzii DSM 13941 [AAUM]
109273
109200
-
Glu
CTC
[ENA]
¡û
>w019643
AAUI01000057
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
6624
6546
-
Glu
CTC
[ENA]
¡û
>w001399
AAAH02000011
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
3866
3788
-
Glu
CTC
[ENA]
¡û
>W08009435
ABPG01000001
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
167999
168075
+
Glu
CTC
[ENA]
¡û
>WENV181409657
OGCI01000441
[OGCI] hot springs metagenome; Hot spring water
10676
10752
+
Glu
CTC
[ENA]
¢þ
>WENV181409717
OGCI01000508
[OGCI] hot springs metagenome; Hot spring water
39594
39518
-
Glu
CTC
[ENA]
¢þ
>WENV181414597
OGCL01000752
[OGCL] hot springs metagenome; Hot spring water
7920
7844
-
Glu
CTC
[ENA]
¢þ
>W141220449
AZXV01000001
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
912349
912425
+
Glu
CTC
[ENA]
¡û
>C08008122
CP000804
Chloroflexota
Roseiflexus castenholzii DSM 13941 [CP000804]
1586453
1586380
-
Glu
CTC
[Ensembl]
¡û
>C08002392
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
2755086
2755162
+
Glu
CTC
[Ensembl]
¡û
>W141279055
JAGA01000002
Chloroflexota
Kallotenue papyrolyticum JKG1 [JAGA]
1186770
1186694
-
Glu
CTC
[ENA]
¡û
>WENV170000809
AFSR01005305
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
58
134
+
Glu
CTC
[ENA]
¢þ
>WENV170432653
CEUS01108102
[CEUS] marine metagenome genome assembly TARA_125_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
79
155
+
Glu
TTC
[ENA]
¢þ
>WENV170452895
CEUZ01284885
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
13813
13889
+
Glu
TTC
[ENA]
¢þ
>WENV170574625
FLYN01001480
[FLYN] hot springs metagenome; Sediment
1580
1504
-
Glu
CTC
[ENA]
¢þ
>W09105863
AAQU01000033
Chloroflexota
Roseiflexus sp. RS-1 [AAQU]
7000
6924
-
Glu
CTC
[ENA]
¡û
>W141804743
JPIM01000181
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
1558
1482
-
Glu
CTC
[ENA]
¡û
>C09102684
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
2756113
2756189
+
Glu
CTC
[Ensembl]
¡û
>C09103214
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
2750430
2750506
+
Glu
CTC
[Ensembl]
¡û
>W1910654072
LYXE01000090
Chloroflexota
Candidatus Chloroploca asiatica asiatica B7-9 [LYXE]
131536
131612
+
Glu
CTC
[ENA]
¡û
>W1911189755
NQWI01000029
Chloroflexota
Candidatus Viridilinea mediisalina mediisalina Kir15-3F [NQWI]
36118
36042
-
Glu
CTC
[ENA]
¡û
>WENV11101152
AFSR01005305
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
58
134
+
Glu
CTC
[ENA]
¡û
>W11125659
ADVR01000028
Chloroflexota
Oscillochloris trichoides DG6 [ADVR]
3367
3291
-
Glu
CTC
[ENA]
¡û
>W1610990848
LWQS01000037
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
48475
48399
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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