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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152757 (24 seq.)
>W1711188756
LWQS01000073
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
681
605
-
Ile
GAT
[ENA]
¡û
>C018822
CP000686
Chloroflexota
Roseiflexus sp. RS-1 [CP000686]
1732138
1732062
-
Ile
GAT
[Ensembl]
¡û
>w019868
AAUM01000044
Chloroflexota
Roseiflexus castenholzii DSM 13941 [AAUM]
8888
8964
+
Ile
GAT
[ENA]
¡û
>w019630
AAUI01000038
Chloroflexota
Chloroflexus aggregans DSM 9485 [AAUI]
950
877
-
Ile
GAT
[ENA]
¡û
>WENV180013758
FMSI01153967
[FMSI] soil metagenome; Soil
393
317
-
Ile
GAT
[ENA]
¢þ
>WENV180037198
FVAA010721523
[FVAA] soil metagenome; Soil
321
397
+
Ile
GAT
[ENA]
¢þ
>w001421
AAAH02000037
Chloroflexota
Chloroflexus aurantiacus J-10-fl [AAAH]
18208
18284
+
Ile
GAT
[ENA]
¡û
>W08009443
ABPG01000001
Chloroflexota
Chloroflexus aurantiacus Y-400-fl [ABPG]
488866
488942
+
Ile
GAT
[ENA]
¡û
>WENV181409967
OGCI01001031
[OGCI] hot springs metagenome; Hot spring water
7761
7837
+
Ile
GAT
[ENA]
¢þ
>WENV181410789
OGCI01006432
[OGCI] hot springs metagenome; Hot spring water
430
354
-
Ile
GAT
[ENA]
¢þ
>WENV181414373
OGCL01000285
[OGCL] hot springs metagenome; Hot spring water
4517
4593
+
Ile
GAT
[ENA]
¢þ
>W141220442
AZXV01000001
Chloroflexota
Chloroflexus sp. Y-396-1 [AZXV]
489520
489596
+
Ile
GAT
[ENA]
¡û
>C08008088
CP000804
Chloroflexota
Roseiflexus castenholzii DSM 13941 [CP000804]
2187193
2187269
+
Ile
GAT
[Ensembl]
¡û
>C08002400
CP000909
Chloroflexota
Chloroflexus aurantiacus J-10-fl [CP000909]
3078244
3078320
+
Ile
GAT
[Ensembl]
¡û
>WENV170000800
AFSR01005099
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
253
177
-
Ile
GAT
[ENA]
¢þ
>W141804737
JPIM01000141
Chloroflexota
Chloroflexus sp. MS-G [JPIM]
9759
9835
+
Ile
GAT
[ENA]
¡û
>C09102691
CP001337
Chloroflexota
Chloroflexus aggregans DSM 9485 [CP001337]
4005706
4005782
+
Ile
GAT
[Ensembl]
¡û
>C09103222
CP001364
Chloroflexota
Chloroflexus aurantiacus [CP001364]
3073356
3073432
+
Ile
GAT
[Ensembl]
¡û
>W1910654080
LYXE01000122
Chloroflexota
Candidatus Chloroploca asiatica asiatica B7-9 [LYXE]
29824
29900
+
Ile
GAT
[ENA]
¡û
>W1911189738
NQWI01000009
Chloroflexota
Candidatus Viridilinea mediisalina mediisalina Kir15-3F [NQWI]
11789
11713
-
Ile
GAT
[ENA]
¡û
>ENV09003763
ADGO01169242
Compost metagenome contig00001
240
316
+
Ile
GAT
[ENA]
¡û
>WENV11101143
AFSR01005099
[AFSR] hot springs metagenome; Yellowstone National Park Mushroom and Octopus hot springs
253
177
-
Ile
GAT
[ENA]
¡û
>W11125675
ADVR01000092
Chloroflexota
Oscillochloris trichoides DG6 [ADVR]
20221
20297
+
Ile
GAT
[ENA]
¡û
>W1610990875
LWQS01000073
Chloroflexota
Chloroflexus islandicus isl-2 [LWQS]
681
605
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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