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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152764 (15 seq.)
>W1711124481
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552313
552237
-
Gly
TCC
[ENA]
¡û
>W1711124551
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293490
293414
-
Gly
TCC
[ENA]
¡û
>W1712010649
NELQ01000002
Bdellovibrionota
Bdellovibrio sp. SKB1291214 [NELQ]
1536173
1536097
-
Gly
TCC
[ENA]
¡û
>C001978
BX842601
Bdellovibrionota
Bdellovibrio bacteriovorus [BX842601]
2891878
2891802
-
Gly
TCC
[Ensembl]
¡û
>WENV181170889
OEIV010107682
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
613
537
-
Gly
TCC
[ENA]
¢þ
>WENV170640276
JFJP01015755
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3161
3085
-
Gly
TCC
[ENA]
¢þ
>WENV170711576
LNFM01005899
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1503
1579
+
Gly
TCC
[ENA]
¢þ
>C181047763
CP020946
Bdellovibrionota
Bdellovibrio bacteriovorus SSB218315 [CP020946]
888110
888186
+
Gly
TCC
-
¡û
>W1910698856
MEPU01000004
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_01_FULL_40_29 [MEPU]
480107
480031
-
Gly
TCC
[ENA]
¡û
>W1910698895
MEPV01000012
Bdellovibrionota
Bdellovibrionales bacterium RIFCSPHIGHO2_02_FULL_40_15 [MEPV]
182049
181973
-
Gly
TCC
[ENA]
¡û
>C151031153
CP007656
Bdellovibrionota
Bdellovibrio bacteriovorus 109J [CP007656]
46253
46177
-
Gly
TCC
[Ensembl]
¡û
>C151087492
CP011926
Bdellovibrionota
Bdellovibrio bacteriovorus [CP011926]
2795398
2795322
-
Gly
TCC
-
¡û
>C131001665
CP002930
Bdellovibrionota
Bdellovibrio bacteriovorus str. Tiberius [CP002930]
3077963
3077887
-
Gly
TCC
[Ensembl]
¡û
>W1610935421
LUKD01000001
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKD]
552313
552237
-
Gly
TCC
[ENA]
¡û
>W1610935491
LUKF01000016
Bdellovibrionota
Bdellovibrio bacteriovorus [LUKF]
293490
293414
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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