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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152773 (91 seq.)
>W1710863447
LMFD01000005
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
55250
55174
-
His
GTG
[ENA]
¡û
>W1710863827
LMFL01000002
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
169736
169812
+
His
GTG
[ENA]
¡û
>W1710863885
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
287256
287180
-
His
GTG
[ENA]
¡û
>W1710865556
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
34296
34372
+
His
GTG
[ENA]
¡û
>W1710865968
LMHC01000006
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
76279
76203
-
His
GTG
[ENA]
¡û
>W1710873848
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
229244
229320
+
His
GTG
[ENA]
¡û
>W1710876109
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
112956
113032
+
His
GTG
[ENA]
¡û
>W1710877323
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
15531
15455
-
His
GTG
[ENA]
¡û
>W1711407960
MGLI01000125
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
3110
3034
-
His
GTG
[ENA]
¡û
>W1711408009
MGLN01000137
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
5483
5559
+
His
GTG
[ENA]
¡û
>C171094869
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2432612
2432536
-
His
GTG
-
¡û
>W131052432
AMYY01000011
Alphaproteobacteria
alpha proteobacterium L41A [AMYY]
18978
18902
-
His
GTG
[ENA]
¡û
>W131160340
AQWM01000006
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
45188
45112
-
His
GTG
[ENA]
¡û
>W131226708
AUEO01000041
Alphaproteobacteria
Caulobacter sp. URHA0033 [AUEO]
38931
39007
+
His
GTG
[ENA]
¡û
>w018470
AATH01000001
Alphaproteobacteria
Caulobacter sp. K31 [AATH]
827113
827189
+
His
GTG
[ENA]
¡û
>WENV180015685
FSST01000192
[FSST] metagenome; soil
3853
3777
-
His
GTG
[ENA]
¢þ
>WENV180015698
FSSX01000133
[FSSX] metagenome; soil
12024
11948
-
His
GTG
[ENA]
¢þ
>WENV180016546
FSVH01000111
[FSVH] metagenome; soil
26656
26580
-
His
GTG
[ENA]
¢þ
>WENV180023410
FTHV01047500
[FTHV] metagenome; soil
87
163
+
His
GTG
[ENA]
¢þ
>WENV180023537
FTHY01028371
[FTHY] metagenome; soil
87
163
+
His
GTG
[ENA]
¢þ
>WENV180024784
FTIJ01014215
[FTIJ] metagenome; soil
89
165
+
His
GTG
[ENA]
¢þ
>WENV180028786
FTJH01000258
[FTJH] metagenome; soil
3474
3398
-
His
GTG
[ENA]
¢þ
>WENV180029127
FTJI01060171
[FTJI] metagenome; soil
2892
2968
+
His
GTG
[ENA]
¢þ
>WENV180029156
FTJI01092125
[FTJI] metagenome; soil
67
143
+
His
GTG
[ENA]
¢þ
>WENV180030628
FTJN01001412
[FTJN] metagenome; soil
7546
7622
+
His
GTG
[ENA]
¢þ
>WENV180030793
FTJN01062001
[FTJN] metagenome; soil
116
192
+
His
GTG
[ENA]
¢þ
>WENV180031412
FTJO01067512
[FTJO] metagenome; soil
334
258
-
His
GTG
[ENA]
¢þ
>WENV180033814
FTKL01322477
[FTKL] metagenome; soil
29
105
+
His
GTG
[ENA]
¢þ
>WENV180034646
FTKR01058148
[FTKR] metagenome; soil
2892
2968
+
His
GTG
[ENA]
¢þ
>WENV180034686
FTKR01103419
[FTKR] metagenome; soil
67
143
+
His
GTG
[ENA]
¢þ
>WENV180264870
OBEQ011610392
[OBEQ] groundwater metagenome; groundwater
221
145
-
His
GTG
[ENA]
¢þ
>WENV181170017
OEIV010019866
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1111
1035
-
His
GTG
[ENA]
¢þ
>WENV181223510
OFDC01025502
[OFDC] hot springs metagenome; Water
83
159
+
His
GTG
[ENA]
¢þ
>WENV181227497
OFDN01013251
[OFDN] hot springs metagenome; Water
1
77
+
His
GTG
[ENA]
¢þ
>WENV181297629
OFHK01089681
[OFHK] soil metagenome; Clay
111
35
-
His
GTG
[ENA]
¢þ
>W08010824
ABRU01000032
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
10664
10740
+
His
GTG
[ENA]
¡û
>WENV181371113
OFQU01028263
[OFQU] wastewater metagenome; Exp Tend CN 90WW
640
564
-
His
GTG
[ENA]
¢þ
>WENV181378606
OFRB01033199
[OFRB] wastewater metagenome; Exp Tend CN 0WW
501
425
-
His
GTG
[ENA]
¢þ
>WENV181378917
OFRC01003637
[OFRC] wastewater metagenome; Exp Tend CN 10WW
1455
1379
-
His
GTG
[ENA]
¢þ
>WENV181384308
OFRI01000094
[OFRI] wastewater metagenome; Exp Tend VB 90WW
4587
4511
-
His
GTG
[ENA]
¢þ
>W141136698
AWGB01000037
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
6009
6085
+
His
GTG
[ENA]
¡û
>C08002366
CP000927
Alphaproteobacteria
Caulobacter sp. K31 [CP000927]
3864772
3864699
-
His
GTG
[Ensembl]
¡û
>WENV170010666
APMI01024514
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
301
225
-
His
GTG
[ENA]
¢þ
>WENV170192860
CEPG01022452
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1256
1332
+
His
GTG
[ENA]
¢þ
>WENV170193388
CEPH01073981
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
635
559
-
His
GTG
[ENA]
¢þ
>WENV170200900
CEPP01008438
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9645
9721
+
His
GTG
[ENA]
¢þ
>WENV170574569
FLYM01061392
[FLYM] hot springs metagenome; Sediment
750
674
-
His
GTG
[ENA]
¢þ
>WENV170577730
FSSH01000643
[FSSH] freshwater metagenome; drinking water
27514
27590
+
His
GTG
[ENA]
¢þ
>WENV170658970
JUGB01003425
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
319
243
-
His
GTG
[ENA]
¢þ
>WENV170712156
LNFM01010214
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5139
5063
-
His
GTG
[ENA]
¢þ
>WENV170713435
LNFM01031190
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4017
3941
-
His
GTG
[ENA]
¢þ
>WENV170714102
LNFM01054461
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2631
2555
-
His
GTG
[ENA]
¢þ
>WENV170784067
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
377716
377640
-
His
GTG
[ENA]
¢þ
>WENV170838385
MDSZ01166767
[MDSZ] marine metagenome; seawater
89947
89871
-
His
GTG
[ENA]
¢þ
>C181056239
CP022048
Alphaproteobacteria
Brevundimonas vesicularis FDAARGOS_289 [CP022048]
2933924
2934000
+
His
GTG
-
¡û
>C191159626
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
2036070
2035994
-
His
GTG
-
¡û
>C191166103
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1753364
1753440
+
His
GTG
-
¡û
>W141712456
JMQR01000115
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
608
684
+
His
GTG
[ENA]
¡û
>W141819025
JQLZ01000002
Alphaproteobacteria
Caulobacter henricii [JQLZ]
557226
557150
-
His
GTG
[ENA]
¡û
>W1910725217
MGLJ01000177
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
701
625
-
His
GTG
[ENA]
¡û
>W1911566765
PCPB01000025
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
15206
15130
-
His
GTG
[ENA]
¡û
>W1911566969
PCPF01000022
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
46377
46453
+
His
GTG
[ENA]
¡û
>W1911567209
PCPK01000019
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
46441
46517
+
His
GTG
[ENA]
¡û
>W1911567297
PCPM01000013
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
1430
1506
+
His
GTG
[ENA]
¡û
>W1911567416
PCPO01000048
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
1418
1494
+
His
GTG
[ENA]
¡û
>W1911737861
QTTA01000016
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
78684
78608
-
His
GTG
[ENA]
¡û
>W1810073505
PEGG01000019
Alphaproteobacteria
Caulobacter sp. B11 [PEGG]
7425
7501
+
His
GTG
[ENA]
¡û
>W1810474479
QAII01000082
Alphaproteobacteria
Caulobacter sp. HMWF025 [QAII]
607
683
+
His
GTG
[ENA]
¡û
>W1810474997
QAIR01000087
Alphaproteobacteria
Caulobacter sp. HMWF009 [QAIR]
455
531
+
His
GTG
[ENA]
¡û
>W1810693170
QLLC01000020
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
14173
14097
-
His
GTG
[ENA]
¡û
>W10109856
ADBM01000010
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
132711
132787
+
His
GTG
[ENA]
¡û
>C10102196
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1692935
1693011
+
His
GTG
[Ensembl]
¡û
>W11112293
ADBM01000010
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
132711
132787
+
His
GTG
[ENA]
¡û
>W1511489475
JWSY01000023
Alphaproteobacteria
Brevundimonas nasdae TPW30 [JWSY]
74892
74968
+
His
GTG
[ENA]
¡û
>W1511547889
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
222977
222901
-
His
GTG
[ENA]
¡û
>C161047059
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2688739
2688663
-
His
GTG
[Ensembl]
¡û
>C161049343
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
1221044
1221120
+
His
GTG
[Ensembl]
¡û
>C161089125
CP015511
Alphaproteobacteria
Brevundimonas sp. GW460-12-10-14-LB2 [CP015511]
1455314
1455238
-
His
GTG
[Ensembl]
¡û
>W1610074207
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
54844
54768
-
His
GTG
[ENA]
¡û
>W121086768
AKKF01000153
Alphaproteobacteria
Caulobacter sp. AP07 [AKKF]
3461
3385
-
His
GTG
[ENA]
¡û
>W1610725793
LMFD01000005
Alphaproteobacteria
Caulobacter sp. Root487D2Y [LMFD]
55250
55174
-
His
GTG
[ENA]
¡û
>W1610726173
LMFL01000002
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
169736
169812
+
His
GTG
[ENA]
¡û
>W1610726231
LMFL01000045
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
287256
287180
-
His
GTG
[ENA]
¡û
>W1610727902
LMGT01000009
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
34296
34372
+
His
GTG
[ENA]
¡û
>W1610728314
LMHC01000006
Alphaproteobacteria
Caulobacter sp. Root655 [LMHC]
76279
76203
-
His
GTG
[ENA]
¡û
>W1610736194
LMNC01000006
Alphaproteobacteria
Brevundimonas sp. Leaf280 [LMNC]
229244
229320
+
His
GTG
[ENA]
¡û
>W1610738455
LMOY01000010
Alphaproteobacteria
Brevundimonas sp. Leaf168 [LMOY]
112956
113032
+
His
GTG
[ENA]
¡û
>W1610739669
LMPZ01000003
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
15531
15455
-
His
GTG
[ENA]
¡û
>W1710071325
BCWM01000001
Alphaproteobacteria
Brevundimonas vesicularis NBRC 12165 [BCWM]
54844
54768
-
His
GTG
[ENA]
¡û
>W1710084615
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
438854
438778
-
His
GTG
[ENA]
¡û
>W1710527030
FNKT01000001
Alphaproteobacteria
Brevundimonas sp. 374 [FNKT]
736949
736873
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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