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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152778 (28 seq.)
>W131165412
ARBO01000003
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ARBO]
143479
143552
+
Arg
CCT
[ENA]
¡û
>W131201879
ASWI01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [ASWI]
602484
602411
-
Arg
CCT
[ENA]
¡û
>W1712036646
NFHQ01000027
Bacillota
Enterococcus cecorum [NFHQ]
372
445
+
Arg
CCT
[ENA]
¡û
>W1712041501
NFLC01000023
Bacillota
Enterococcus cecorum [NFLC]
327
400
+
Arg
CCT
[ENA]
¡û
>W1712096928
NIBL01000001
Bacillota
Enterococcus cecorum [NIBL]
1095915
1095988
+
Arg
CCT
[ENA]
¡û
>W141013034
AHYS01000001
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [AHYS]
215383
215310
-
Arg
CCT
[ENA]
¡û
>WENV181195924
OEQV01002046
[OEQV] metagenome; water of meat washing
241
168
-
Arg
CCT
[ENA]
¢þ
>WENV181201168
OERM01005470
[OERM] metagenome; water of meat washing
666
739
+
Arg
CCT
[ENA]
¢þ
>C181205088
LS483306
Bacillota
Enterococcus cecorum NCTC12421 [LS483306]
867974
867901
-
Arg
CCT
-
¡û
>W1910583570
JXKL01000004
Bacillota
Enterococcus cecorum DSM 20682 = ATCC 43198 [JXKL]
111274
111347
+
Arg
CCT
[ENA]
¡û
>W1910605444
LEOW01000043
Bacillota
Enterococcus cecorum 100AEA1 [LEOW]
104036
104109
+
Arg
CCT
[ENA]
¡û
>W1910605457
LEOX01000004
Bacillota
Enterococcus cecorum 108EA1 [LEOX]
52413
52486
+
Arg
CCT
[ENA]
¡û
>W1910605521
LEOY01000005
Bacillota
Enterococcus cecorum 170AEA1 [LEOY]
97933
97860
-
Arg
CCT
[ENA]
¡û
>W1910605565
LEOZ01000006
Bacillota
Enterococcus cecorum 197EA2 [LEOZ]
24364
24437
+
Arg
CCT
[ENA]
¡û
>W1910605609
LEPA01000003
Bacillota
Enterococcus cecorum 215EA1 [LEPA]
48816
48889
+
Arg
CCT
[ENA]
¡û
>W1511632581
LDDZ01000005
Bacillota
Enterococcus cecorum D-104 [LDDZ]
117406
117479
+
Arg
CCT
[ENA]
¡û
>W1511632639
LDEA01000018
Bacillota
Enterococcus cecorum CL-1 [LDEA]
36446
36373
-
Arg
CCT
[ENA]
¡û
>W1511632690
LDEB01000016
Bacillota
Enterococcus cecorum CB-32 [LDEB]
83261
83334
+
Arg
CCT
[ENA]
¡û
>W1511632769
LDEC01000031
Bacillota
Enterococcus cecorum G-29 [LDEC]
48385
48312
-
Arg
CCT
[ENA]
¡û
>W1511632770
LDED01000002
Bacillota
Enterococcus cecorum BB-66 [LDED]
51870
51943
+
Arg
CCT
[ENA]
¡û
>W1511639100
LDOW01000007
Bacillota
Enterococcus cecorum 1710s23 [LDOW]
388530
388603
+
Arg
CCT
[ENA]
¡û
>W1511639136
LDOX01000004
Bacillota
Enterococcus cecorum 1711s24 [LDOX]
36446
36373
-
Arg
CCT
[ENA]
¡û
>C161023165
CP010059
Bacillota
Enterococcus cecorum CE1 [CP010059]
588774
588701
-
Arg
CCT
-
¡û
>C161023184
CP010060
Bacillota
Enterococcus cecorum SA1 [CP010060]
627532
627459
-
Arg
CCT
-
¡û
>C161023214
CP010061
Bacillota
Enterococcus cecorum SA2 [CP010061]
588459
588386
-
Arg
CCT
-
¡û
>C161023266
CP010062
Bacillota
Enterococcus cecorum CE2 [CP010062]
553064
552991
-
Arg
CCT
-
¡û
>C161023315
CP010063
Bacillota
Enterococcus cecorum CE3 [CP010063]
541039
540966
-
Arg
CCT
-
¡û
>C161023370
CP010064
Bacillota
Enterococcus cecorum SA3 [CP010064]
593250
593177
-
Arg
CCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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