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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153039 (27 seq.)
>W1710891833
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
810
734
-
Arg
ACG
[ENA]
¡û
>W1711342431
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169940
170016
+
Arg
ACG
[ENA]
¡û
>W1711510592
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5798
5874
+
Arg
ACG
[ENA]
¡û
>W131162548
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25410
25334
-
Arg
ACG
[ENA]
¡û
>WENV180263122
OBEQ011446696
[OBEQ] groundwater metagenome; groundwater
486
410
-
Arg
ACG
[ENA]
¢þ
>W141088295
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17455
17379
-
Arg
ACG
[ENA]
¡û
>W141246577
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14781
14857
+
Arg
ACG
[ENA]
¡û
>W141246659
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5448
5372
-
Arg
ACG
[ENA]
¡û
>WENV183673786
ORJL011317769
[ORJL] groundwater metagenome; groundwater
1207
1283
+
Arg
ACG
[ENA]
¢þ
>C141011745
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153616
1153692
+
Arg
ACG
[Ensembl]
¡û
>W1910647146
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25379
25303
-
Arg
ACG
[ENA]
¡û
>W1911608713
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23270
23346
+
Arg
ACG
[ENA]
¡û
>W1911613543
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25130
25054
-
Arg
ACG
[ENA]
¡û
>W1810047159
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5125
5201
+
Arg
ACG
[ENA]
¡û
>C151016295
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
12362
12438
+
Arg
ACG
[Ensembl]
¡û
>C151016334
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174365
2174289
-
Arg
ACG
[Ensembl]
¡û
>C151016348
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172607
2172531
-
Arg
ACG
[Ensembl]
¡û
>W1511327358
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2842
2766
-
Arg
ACG
[ENA]
¡û
>W1511533699
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9712
9788
+
Arg
ACG
[ENA]
¡û
>W1511644711
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
22264
22340
+
Arg
ACG
[ENA]
¡û
>W1511644722
LDXJ01000049
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
81059
80983
-
Arg
ACG
[ENA]
¡û
>W11181408
AGJB01000010
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
79548
79472
-
Arg
ACG
[ENA]
¡û
>W11181431
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1088
1012
-
Arg
ACG
[ENA]
¡û
>C131008538
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085054
2084978
-
Arg
ACG
[Ensembl]
¡û
>C131008589
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114842
2114766
-
Arg
ACG
[Ensembl]
¡û
>W1610752198
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
810
734
-
Arg
ACG
[ENA]
¡û
>W1710586653
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
29332
29408
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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