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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153040 (21 seq.)
>W1710891838
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
369
293
-
Met
CAT
[ENA]
¡û
>W1711342436
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
170389
170465
+
Met
CAT
[ENA]
¡û
>W1711926258
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6851
6927
+
Met
CAT
[ENA]
¡û
>W1711932744
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
940
864
-
Met
CAT
[ENA]
¡û
>W131162553
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
24963
24887
-
Met
CAT
[ENA]
¡û
>W141088300
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
16880
16804
-
Met
CAT
[ENA]
¡û
>W141246582
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
15230
15306
+
Met
CAT
[ENA]
¡û
>W141246664
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
4999
4923
-
Met
CAT
[ENA]
¡û
>WENV183669278
ORJL010825177
[ORJL] groundwater metagenome; groundwater
187
111
-
Ile2
CAT
[ENA]
¢þ
>C141011750
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1154065
1154141
+
Met
CAT
[Ensembl]
¡û
>W1910647151
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
24932
24856
-
Met
CAT
[ENA]
¡û
>W1911608718
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23717
23793
+
Met
CAT
[ENA]
¡û
>W1911613548
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
24683
24607
-
Met
CAT
[ENA]
¡û
>W1511644716
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
23016
23092
+
Met
CAT
[ENA]
¡û
>W1511646048
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5611
5687
+
Met
CAT
[ENA]
¡û
>C121005938
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
108827
108903
+
Met
CAT
[Ensembl]
¡û
>C121014855
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
104153
104229
+
Met
CAT
[Ensembl]
¡û
>W121010498
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3929
4005
+
Met
CAT
[ENA]
¡û
>C131008543
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2084479
2084403
-
Met
CAT
[Ensembl]
¡û
>C131008594
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114267
2114191
-
Met
CAT
[Ensembl]
¡û
>W1610752203
LNDB01000020
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
369
293
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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