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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153689 (5 seq.)
>WENV180172303
OAVX01000780
[OAVX] human gut metagenome; faeces
7214
7128
-
Leu
CAA
[ENA]
¡û
>WENV183225341
OLQN01060982
[OLQN] human gut metagenome; faeces
232
146
-
Leu
CAA
[ENA]
¡û
>W1911541786
OPYI01000002
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
158987
158901
-
Leu
CAA
[ENA]
¡û
>W2010253553
CABJAE020000001
Bacillota
Peptoniphilaceae bacterium [CABJAE]
178004
177918
-
Leu
CAA
[ENA]
¡û
>W2011170655
OPYI01000002
Bacillota
Peptoniphilus sp. Marseille-P3761 [OPYI]
158987
158901
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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