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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153934 (85 seq.)
>W1710891789
LNDA01000070
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
11094
11009
-
Tyr
GTA
[ENA]
¡û
>W1710935819
LOKT01000006
Actinomycetota
Nocardia donostiensis [LOKT]
229089
229174
+
Tyr
GTA
[ENA]
¡û
>W1711739097
MUBO01000197
Actinomycetota
Streptomyces daghestanicus [MUBO]
33290
33375
+
Tyr
GTA
[ENA]
¡û
>W1711747313
MUKP01000013
Actinomycetota
Nocardia donostiensis [MUKP]
83803
83718
-
Tyr
GTA
[ENA]
¡û
>W1711750424
MUMY01000017
Actinomycetota
Nocardia donostiensis [MUMY]
84503
84418
-
Tyr
GTA
[ENA]
¡û
>PL171001804
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
1318438
1318523
+
Tyr
GTA
[ENA]
¡û
>C014833
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
5421519
5421434
-
Tyr
GTA
[Ensembl]
¡û
>WENV180031981
FTJU01002312
[FTJU] metagenome; soil
20857
20941
+
Tyr
GTA
[ENA]
¢þ
>W141168702
AXVD01000010
Actinomycetota
Nocardia sp. CNY236 [AXVD]
132300
132217
-
Tyr
GTA
[ENA]
¡û
>C181139074
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
2404623
2404707
+
Tyr
GTA
-
¡û
>C181200291
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
4292075
4292159
+
Tyr
GTA
-
¡û
>C191219100
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
4081099
4081015
-
Tyr
GTA
-
¡û
>W141759293
JNZF01000011
Actinomycetota
Nocardia carnea carneus [JNZF]
98311
98226
-
Tyr
GTA
[ENA]
¡û
>W141760948
JOAJ01000017
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
81586
81671
+
Tyr
GTA
[ENA]
¡û
>W141767068
JOEJ01000017
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
81548
81633
+
Tyr
GTA
[ENA]
¡û
>W1910433920
FVWC01003260
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
67
151
+
Tyr
GTA
[ENA]
¡û
>W1911422406
NXEG01000003
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
335702
335786
+
Tyr
GTA
[ENA]
¡û
>W1911422502
NXEH01000036
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
22805
22889
+
Tyr
GTA
[ENA]
¡û
>W1911493009
OBEG01000002
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
1031062
1030979
-
Tyr
GTA
[ENA]
¡û
>W1911573035
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
4132490
4132406
-
Tyr
GTA
[ENA]
¡û
>W1810282655
PSZF01000009
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
66186
66270
+
Tyr
GTA
[ENA]
¡û
>W1810532533
QCYJ01000130
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
297200
297284
+
Tyr
GTA
[ENA]
¡û
>W1810720287
QNRE01000005
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
183883
183967
+
Tyr
GTA
[ENA]
¡û
>C121016059
FO082843
Actinomycetota
Nocardia cyriacigeorgica GUH-2 [FO082843]
5495884
5495799
-
Tyr
GTA
[Ensembl]
¡û
>W121124904
BAFP01000137
Actinomycetota
Nocardia abscessus NBRC 100374 [BAFP]
9736
9653
-
Tyr
GTA
[ENA]
¡û
>W121124999
BAFR01000203
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
41214
41129
-
Tyr
GTA
[ENA]
¡û
>W121125049
BAFS01000271
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
8547
8462
-
Tyr
GTA
[ENA]
¡û
>W121125146
BAFU01000083
Actinomycetota
Nocardia brevicatena NBRC 12119 [BAFU]
9550
9467
-
Tyr
GTA
[ENA]
¡û
>W121125195
BAFV01000067
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
23177
23092
-
Tyr
GTA
[ENA]
¡û
>W121125357
BAFY01000220
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
27106
27021
-
Tyr
GTA
[ENA]
¡û
>W121125404
BAFZ01000116
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
21672
21587
-
Tyr
GTA
[ENA]
¡û
>W121125454
BAGA01000132
Actinomycetota
Nocardia higoensis NBRC 100133 [BAGA]
114672
114587
-
Tyr
GTA
[ENA]
¡û
>W121125680
BAGE01000057
Actinomycetota
Nocardia paucivorans NBRC 100373 [BAGE]
118985
118902
-
Tyr
GTA
[ENA]
¡û
>W121125722
BAGF01000079
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
23234
23151
-
Tyr
GTA
[ENA]
¡û
>W121125774
BAGG01000115
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
7964
8047
+
Tyr
GTA
[ENA]
¡û
>W121125924
BAGJ01000168
Actinomycetota
Nocardia testacea NBRC 100365 [BAGJ]
11149
11064
-
Tyr
GTA
[ENA]
¡û
>W121126142
BAGN01000216
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
31
116
+
Tyr
GTA
[ENA]
¡û
>W1610069088
BCRV01000001
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
85963
85878
-
Tyr
GTA
[ENA]
¡û
>W1610078323
BDAU01000048
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
27235
27318
+
Tyr
GTA
[ENA]
¡û
>W1610078559
BDAZ01000012
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
103722
103637
-
Tyr
GTA
[ENA]
¡û
>W1610078611
BDBA01000050
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
46893
46976
+
Tyr
GTA
[ENA]
¡û
>W1610078674
BDBB01000024
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
19923
19840
-
Tyr
GTA
[ENA]
¡û
>W1610078741
BDBC01000070
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
40094
40179
+
Tyr
GTA
[ENA]
¡û
>W1610079098
BDBJ01000141
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
8320
8405
+
Tyr
GTA
[ENA]
¡û
>W1610079220
BDBM01000004
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
319427
319510
+
Tyr
GTA
[ENA]
¡û
>W1610079353
BDBO01000127
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
49178
49263
+
Tyr
GTA
[ENA]
¡û
>W1610079379
BDBP01000031
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
85391
85308
-
Tyr
GTA
[ENA]
¡û
>W1610079597
BDBT01000020
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
113385
113470
+
Tyr
GTA
[ENA]
¡û
>W1610079747
BDBW01000022
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
183787
183872
+
Tyr
GTA
[ENA]
¡û
>W1610079828
BDBX01000087
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
1841
1926
+
Tyr
GTA
[ENA]
¡û
>W1610079873
BDBY01000256
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
4879
4794
-
Tyr
GTA
[ENA]
¡û
>W1610079915
BDBZ01000024
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
65580
65665
+
Tyr
GTA
[ENA]
¡û
>W1610080221
BDCF01000001
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
469093
469010
-
Tyr
GTA
[ENA]
¡û
>W1610080305
BDCG01000016
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
306048
306133
+
Tyr
GTA
[ENA]
¡û
>W1610080461
BDCJ01000015
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
10894
10809
-
Tyr
GTA
[ENA]
¡û
>W1610080490
BDCK01000011
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
21704
21619
-
Tyr
GTA
[ENA]
¡û
>W1610080578
BDCL01000067
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
1709
1794
+
Tyr
GTA
[ENA]
¡û
>W1610080869
BDCT01000045
Actinomycetota
Nocardia arizonensis [BDCT]
88952
88867
-
Tyr
GTA
[ENA]
¡û
>W1610080910
BDCU01000047
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
10780
10695
-
Tyr
GTA
[ENA]
¡û
>W1610617954
LGYZ01000116
Actinomycetota
Nocardia arizonensis [LGYZ]
89000
88915
-
Tyr
GTA
[ENA]
¡û
>W1610752154
LNDA01000070
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
11094
11009
-
Tyr
GTA
[ENA]
¡û
>W1710066461
BCRV01000001
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
85963
85878
-
Tyr
GTA
[ENA]
¡û
>W1710076882
BDAU01000048
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
27235
27318
+
Tyr
GTA
[ENA]
¡û
>W1710077118
BDAZ01000012
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
103722
103637
-
Tyr
GTA
[ENA]
¡û
>W1710077170
BDBA01000050
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
46893
46976
+
Tyr
GTA
[ENA]
¡û
>W1710077233
BDBB01000024
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
19923
19840
-
Tyr
GTA
[ENA]
¡û
>W1710077300
BDBC01000070
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
40094
40179
+
Tyr
GTA
[ENA]
¡û
>W1710077657
BDBJ01000141
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
8320
8405
+
Tyr
GTA
[ENA]
¡û
>W1710077779
BDBM01000004
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
319427
319510
+
Tyr
GTA
[ENA]
¡û
>W1710077912
BDBO01000127
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
49178
49263
+
Tyr
GTA
[ENA]
¡û
>W1710077938
BDBP01000031
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
85391
85308
-
Tyr
GTA
[ENA]
¡û
>W1710078156
BDBT01000020
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
113385
113470
+
Tyr
GTA
[ENA]
¡û
>W1710078306
BDBW01000022
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
183787
183872
+
Tyr
GTA
[ENA]
¡û
>W1710078387
BDBX01000087
Actinomycetota
Nocardia sienata NBRC 100364 [BDBX]
1841
1926
+
Tyr
GTA
[ENA]
¡û
>W1710078432
BDBY01000256
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
4879
4794
-
Tyr
GTA
[ENA]
¡û
>W1710078474
BDBZ01000024
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
65580
65665
+
Tyr
GTA
[ENA]
¡û
>W1710078780
BDCF01000001
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
469093
469010
-
Tyr
GTA
[ENA]
¡û
>W1710078864
BDCG01000016
Actinomycetota
Nocardia flavorosea NBRC 108225 [BDCG]
306048
306133
+
Tyr
GTA
[ENA]
¡û
>W1710079020
BDCJ01000015
Actinomycetota
Nocardia grenadensis NBRC 108939 [BDCJ]
10894
10809
-
Tyr
GTA
[ENA]
¡û
>W1710079049
BDCK01000011
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
21704
21619
-
Tyr
GTA
[ENA]
¡û
>W1710079137
BDCL01000067
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
1709
1794
+
Tyr
GTA
[ENA]
¡û
>W1710079428
BDCT01000045
Actinomycetota
Nocardia arizonensis [BDCT]
88952
88867
-
Tyr
GTA
[ENA]
¡û
>W1710079469
BDCU01000047
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
10780
10695
-
Tyr
GTA
[ENA]
¡û
>W1710599675
FTOW01000009
Actinomycetota
Nocardia farcinica [FTOW]
8392
8307
-
Tyr
GTA
[ENA]
¡û
>W1710744129
LGYZ01000116
Actinomycetota
Nocardia arizonensis [LGYZ]
89000
88915
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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