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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154128 (19 seq.)
>WENV180221484
OBAZ01005358
[OBAZ] human gut metagenome; human gut
654
577
-
Gln
TTG
[ENA]
¡û
>WENV180240305
OBDC01009173
[OBDC] human gut metagenome; human gut
994
917
-
Gln
TTG
[ENA]
¡û
>WENV180340136
OBLI01015040
[OBLI] pig gut metagenome; faeces
1816
1893
+
Gln
TTG
[ENA]
¡û
>WENV180540016
OCHP01252317
[OCHP] human gut metagenome; human gut
141
64
-
Gln
TTG
[ENA]
¡û
>WENV180544391
OCIQ01002158
[OCIQ] human gut metagenome; human gut
263
340
+
Gln
TTG
[ENA]
¡û
>WENV180623392
OCQE01027823
[OCQE] human gut metagenome; human gut
19
96
+
Gln
TTG
[ENA]
¡û
>WENV180628706
OCQO01325073
[OCQO] human gut metagenome; human gut
16
93
+
Gln
TTG
[ENA]
¡û
>WENV181507794
OGGP01001423
[OGGP] metagenome; Human gut stool
4827
4904
+
Gln
TTG
[ENA]
¡û
>WENV181946379
OGZC01018281
[OGZC] human gut metagenome; faeces
524
447
-
Gln
TTG
[ENA]
¡û
>WENV182064972
OHFA01000002
[OHFA] human gut metagenome; feces
170849
170772
-
Gln
TTG
[ENA]
¡û
>WENV182250595
OHST01000002
[OHST] human gut metagenome; feces
166133
166056
-
Gln
TTG
[ENA]
¡û
>WENV182660496
OJMM01002182
[OJMM] human gut metagenome; feces
1387
1310
-
Gln
TTG
[ENA]
¡û
>WENV182701598
OJOP01038168
[OJOP] human gut metagenome; human gut
361
284
-
Gln
TTG
[ENA]
¡û
>WENV182897252
OKSP01000001
[OKSP] human gut metagenome; feces
273580
273503
-
Gln
TTG
[ENA]
¡û
>WENV183551596
OOBJ01000004
[OOBJ] human gut metagenome; human gut
167024
166947
-
Gln
TTG
[ENA]
¡û
>WENV183571599
OOCE01015301
[OOCE] human gut metagenome; human gut
48
125
+
Gln
TTG
[ENA]
¡û
>WENV183584218
OOCQ01004728
[OOCQ] human gut metagenome; human gut
3107
3030
-
Gln
TTG
[ENA]
¡û
>WENV183598106
OODG01000056
[OODG] human gut metagenome; human gut
51339
51416
+
Gln
TTG
[ENA]
¡û
>WENV183600088
OODI01000027
[OODI] human gut metagenome; human gut
21154
21077
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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