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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154227 (6 seq.)
>WENV183699219
OZSS01016271
[OZSS] metagenome; Seawater sample
1733
1819
+
Leu
TAA
[ENA]
¡û
>WENV170453392
CEUZ01409820
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1
87
+
Leu
TAA
[ENA]
¡û
>WENV170788168
MDSV01028971
[MDSV] marine metagenome; seawater
2744
2658
-
Leu
TAA
[ENA]
¡û
>WENV170798614
MDSV01199580
[MDSV] marine metagenome; seawater
17
103
+
Leu
TAA
[ENA]
¡û
>WENV170860069
MDTB01045578
[MDTB] marine metagenome; seawater
928
1014
+
Leu
TAA
[ENA]
¡û
>WENV170873591
MDTB01234609
[MDTB] marine metagenome; seawater
7869
7955
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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