This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154834 (131 seq.)
>WENV180006068
FLRX01127471
[FLRX] metagenome; saliva
24
100
+
Arg
CCG
[ENA]
¢þ
>WENV180007734
FLSA01237937
[FLSA] metagenome; saliva
2003
2079
+
Arg
CCG
[ENA]
¢þ
>WENV180225907
OBBP01001810
[OBBP] human oral metagenome; human oral
449
525
+
Arg
CCG
[ENA]
¢þ
>WENV180240991
OBDF01001738
[OBDF] human oral metagenome; human oral
458
382
-
Arg
CCG
[ENA]
¢þ
>WENV180697662
ODDE01002323
[ODDE] human metagenome; G_DNA_Supragingival plaque
1567
1491
-
Arg
CCG
[ENA]
¢þ
>WENV180697815
ODDE01005658
[ODDE] human metagenome; G_DNA_Supragingival plaque
917
841
-
Arg
CCG
[ENA]
¢þ
>WENV180720834
ODGJ01200157
[ODGJ] human metagenome; G_DNA_Tongue dorsum
23
99
+
Arg
CCG
[ENA]
¢þ
>WENV180721267
ODGK01047191
[ODGK] human metagenome; G_DNA_Palatine Tonsils
24
100
+
Arg
CCG
[ENA]
¢þ
>WENV180721478
ODGL01000892
[ODGL] human metagenome; G_DNA_Subgingival plaque
1113
1037
-
Arg
CCG
[ENA]
¢þ
>WENV180726594
ODGU01000150
[ODGU] human metagenome; G_DNA_Supragingival plaque
20331
20255
-
Arg
CCG
[ENA]
¢þ
>WENV180731605
ODGW01003207
[ODGW] human metagenome; G_DNA_Supragingival plaque
2779
2855
+
Arg
CCG
[ENA]
¢þ
>WENV180733709
ODGZ01000554
[ODGZ] human metagenome; G_DNA_Supragingival plaque
15251
15175
-
Arg
CCG
[ENA]
¢þ
>WENV180734391
ODGZ01007655
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1569
1493
-
Arg
CCG
[ENA]
¢þ
>WENV180750096
ODHS01000440
[ODHS] human metagenome; G_DNA_Supragingival plaque
22136
22060
-
Arg
CCG
[ENA]
¢þ
>WENV180750501
ODHS01002936
[ODHS] human metagenome; G_DNA_Supragingival plaque
3028
2952
-
Arg
CCG
[ENA]
¢þ
>WENV180751659
ODHS01099872
[ODHS] human metagenome; G_DNA_Supragingival plaque
380
304
-
Arg
CCG
[ENA]
¢þ
>WENV180769191
ODIG01042019
[ODIG] human metagenome; G_DNA_Tongue dorsum
980
904
-
Arg
CCG
[ENA]
¢þ
>WENV180775005
ODIJ01160183
[ODIJ] human metagenome; G_DNA_Tongue dorsum
224
148
-
Arg
CCG
[ENA]
¢þ
>WENV180776188
ODIK01021011
[ODIK] human metagenome; G_DNA_Tongue dorsum
80
156
+
Arg
CCG
[ENA]
¢þ
>WENV180786688
ODIS01000047
[ODIS] human metagenome; G_DNA_Supragingival plaque
37510
37586
+
Arg
CCG
[ENA]
¢þ
>WENV180786855
ODIS01000361
[ODIS] human metagenome; G_DNA_Supragingival plaque
7692
7616
-
Arg
CCG
[ENA]
¢þ
>WENV180787370
ODIS01004604
[ODIS] human metagenome; G_DNA_Supragingival plaque
724
800
+
Arg
CCG
[ENA]
¢þ
>WENV180788234
ODIS01040757
[ODIS] human metagenome; G_DNA_Supragingival plaque
180
104
-
Arg
CCG
[ENA]
¢þ
>WENV180790644
ODIT01025585
[ODIT] human metagenome; G_DNA_Tongue dorsum
80
156
+
Arg
CCG
[ENA]
¢þ
>WENV180791982
ODIW01000021
[ODIW] human metagenome; G_DNA_Tongue dorsum
29575
29651
+
Arg
CCG
[ENA]
¢þ
>WENV180795735
ODJB01000211
[ODJB] human metagenome; G_DNA_Supragingival plaque
29854
29778
-
Arg
CCG
[ENA]
¢þ
>WENV180795835
ODJB01000372
[ODJB] human metagenome; G_DNA_Supragingival plaque
20245
20169
-
Arg
CCG
[ENA]
¢þ
>WENV180803670
ODJG01000018
[ODJG] human metagenome; G_DNA_Supragingival plaque
68793
68869
+
Arg
CCG
[ENA]
¢þ
>WENV180808539
ODJK01000184
[ODJK] human metagenome; G_DNA_Subgingival plaque
5321
5397
+
Arg
CCG
[ENA]
¢þ
>WENV180814307
ODJO01012386
[ODJO] human metagenome; G_DNA_Supragingival plaque
1914
1990
+
Arg
CCG
[ENA]
¢þ
>WENV180821520
ODJS01013737
[ODJS] human metagenome; G_DNA_Tongue dorsum
371
295
-
Arg
CCG
[ENA]
¢þ
>WENV180823651
ODJW01092018
[ODJW] human metagenome; G_DNA_Supragingival plaque
315
239
-
Arg
CCG
[ENA]
¢þ
>WENV180824186
ODJX01001286
[ODJX] human metagenome; G_DNA_Supragingival plaque
971
1047
+
Arg
CCG
[ENA]
¢þ
>WENV180831920
ODKC01000249
[ODKC] human metagenome; G_DNA_Supragingival plaque
5873
5949
+
Arg
CCG
[ENA]
¢þ
>WENV180832646
ODKC01002892
[ODKC] human metagenome; G_DNA_Supragingival plaque
9373
9449
+
Arg
CCG
[ENA]
¢þ
>WENV180835165
ODKE01000964
[ODKE] human metagenome; G_DNA_Supragingival plaque
14650
14574
-
Arg
CCG
[ENA]
¢þ
>WENV180835858
ODKE01016807
[ODKE] human metagenome; G_DNA_Supragingival plaque
1287
1363
+
Arg
CCG
[ENA]
¢þ
>WENV180842814
ODKN01000013
[ODKN] human metagenome; G_DNA_Supragingival plaque
24217
24141
-
Arg
CCG
[ENA]
¢þ
>WENV180846053
ODKT01004421
[ODKT] human metagenome; G_DNA_Supragingival plaque
2871
2795
-
Arg
CCG
[ENA]
¢þ
>WENV180847001
ODKT01034035
[ODKT] human metagenome; G_DNA_Supragingival plaque
575
651
+
Arg
CCG
[ENA]
¢þ
>WENV180860481
ODLD01101855
[ODLD] human metagenome; G_DNA_Supragingival plaque
158
234
+
Arg
CCG
[ENA]
¢þ
>WENV180862109
ODLE01034851
[ODLE] human metagenome; G_DNA_Tongue dorsum
820
744
-
Arg
CCG
[ENA]
¢þ
>WENV180884016
ODMC01032094
[ODMC] human metagenome; G_DNA_Tongue dorsum
980
904
-
Arg
CCG
[ENA]
¢þ
>WENV180888340
ODMN01000510
[ODMN] human metagenome; G_DNA_Supragingival plaque
4956
5032
+
Arg
CCG
[ENA]
¢þ
>WENV180888352
ODMN01000559
[ODMN] human metagenome; G_DNA_Supragingival plaque
12003
11927
-
Arg
CCG
[ENA]
¢þ
>WENV180888540
ODMN01001524
[ODMN] human metagenome; G_DNA_Supragingival plaque
11028
10952
-
Arg
CCG
[ENA]
¢þ
>WENV180921359
ODTJ01000029
[ODTJ] human metagenome; G_DNA_Supragingival plaque
32626
32550
-
Arg
CCG
[ENA]
¢þ
>WENV180922625
ODTJ01007027
[ODTJ] human metagenome; G_DNA_Supragingival plaque
1573
1497
-
Arg
CCG
[ENA]
¢þ
>WENV180923466
ODTK01000002
[ODTK] human metagenome; G_DNA_Supragingival plaque
76542
76618
+
Arg
CCG
[ENA]
¢þ
>WENV180923553
ODTK01000021
[ODTK] human metagenome; G_DNA_Supragingival plaque
33728
33804
+
Arg
CCG
[ENA]
¢þ
>WENV180928659
ODTM01143951
[ODTM] human metagenome; G_DNA_Supragingival plaque
7
83
+
Arg
CCG
[ENA]
¢þ
>WENV180931990
ODTP01018436
[ODTP] human metagenome; G_DNA_Tongue dorsum
665
741
+
Arg
CCG
[ENA]
¢þ
>WENV180937780
ODTX01000074
[ODTX] human metagenome; G_DNA_Supragingival plaque
19202
19278
+
Arg
CCG
[ENA]
¢þ
>WENV180938149
ODTX01000745
[ODTX] human metagenome; G_DNA_Supragingival plaque
12680
12756
+
Arg
CCG
[ENA]
¢þ
>WENV180943389
ODUC01000356
[ODUC] human metagenome; G_DNA_Supragingival plaque
25323
25399
+
Arg
CCG
[ENA]
¢þ
>WENV180944269
ODUC01011952
[ODUC] human metagenome; G_DNA_Supragingival plaque
2021
2097
+
Arg
CCG
[ENA]
¢þ
>WENV180946225
ODUD01019326
[ODUD] human metagenome; G_DNA_Tongue dorsum
499
575
+
Arg
CCG
[ENA]
¢þ
>WENV180949679
ODUG01029002
[ODUG] human metagenome; G_DNA_Tongue dorsum
1270
1194
-
Arg
CCG
[ENA]
¢þ
>WENV180950963
ODUH01005093
[ODUH] human metagenome; G_DNA_Subgingival plaque
3139
3215
+
Arg
CCG
[ENA]
¢þ
>WENV180951055
ODUH01007562
[ODUH] human metagenome; G_DNA_Subgingival plaque
3180
3104
-
Arg
CCG
[ENA]
¢þ
>WENV180951339
ODUH01018126
[ODUH] human metagenome; G_DNA_Subgingival plaque
1324
1248
-
Arg
CCG
[ENA]
¢þ
>WENV180951493
ODUH01026754
[ODUH] human metagenome; G_DNA_Subgingival plaque
1082
1006
-
Arg
CCG
[ENA]
¢þ
>WENV180954967
ODUJ01018628
[ODUJ] human metagenome; G_DNA_Tongue dorsum
80
156
+
Arg
CCG
[ENA]
¢þ
>WENV180973085
ODUW01001139
[ODUW] human metagenome; G_DNA_Supragingival plaque
3851
3775
-
Arg
CCG
[ENA]
¢þ
>WENV180975868
ODUY01026813
[ODUY] human metagenome; G_DNA_Supragingival plaque
172
248
+
Arg
CCG
[ENA]
¢þ
>WENV180976692
ODUY01200361
[ODUY] human metagenome; G_DNA_Supragingival plaque
2
78
+
Arg
CCG
[ENA]
¢þ
>WENV180980394
ODVE01000109
[ODVE] human metagenome; G_DNA_Supragingival plaque
36240
36164
-
Arg
CCG
[ENA]
¢þ
>WENV180980494
ODVE01000271
[ODVE] human metagenome; G_DNA_Supragingival plaque
17196
17120
-
Arg
CCG
[ENA]
¢þ
>WENV180980870
ODVE01002946
[ODVE] human metagenome; G_DNA_Supragingival plaque
4164
4240
+
Arg
CCG
[ENA]
¢þ
>WENV180981376
ODVE01019265
[ODVE] human metagenome; G_DNA_Supragingival plaque
68
144
+
Arg
CCG
[ENA]
¢þ
>WENV180982410
ODVF01000015
[ODVF] human metagenome; G_DNA_Supragingival plaque
29938
30014
+
Arg
CCG
[ENA]
¢þ
>WENV180985042
ODVJ01000426
[ODVJ] human metagenome; G_DNA_Tongue dorsum
17677
17753
+
Arg
CCG
[ENA]
¢þ
>WENV180987472
ODVK01027895
[ODVK] human metagenome; G_DNA_Supragingival plaque
804
728
-
Arg
CCG
[ENA]
¢þ
>WENV180987516
ODVK01034344
[ODVK] human metagenome; G_DNA_Supragingival plaque
574
498
-
Arg
CCG
[ENA]
¢þ
>WENV180998245
ODVT01000113
[ODVT] human metagenome; G_DNA_Buccal mucosa
36505
36581
+
Arg
CCG
[ENA]
¢þ
>WENV180998460
ODVT01000425
[ODVT] human metagenome; G_DNA_Buccal mucosa
10872
10796
-
Arg
CCG
[ENA]
¢þ
>WENV181003772
ODVX01033574
[ODVX] human metagenome; G_DNA_Supragingival plaque
1094
1018
-
Arg
CCG
[ENA]
¢þ
>WENV181009168
ODWE01035113
[ODWE] human metagenome; G_DNA_Supragingival plaque
603
527
-
Arg
CCG
[ENA]
¢þ
>WENV181012805
ODWK01028291
[ODWK] human metagenome; G_DNA_Supragingival plaque
77
153
+
Arg
CCG
[ENA]
¢þ
>WENV181018563
ODWU01000001
[ODWU] human metagenome; G_DNA_Supragingival plaque
142819
142743
-
Arg
CCG
[ENA]
¢þ
>WENV181034163
ODXN01095393
[ODXN] human metagenome; G_DNA_Tongue dorsum
52
128
+
Arg
CCG
[ENA]
¢þ
>WENV181049238
ODYD01000001
[ODYD] human metagenome; G_DNA_Supragingival plaque
269941
269865
-
Arg
CCG
[ENA]
¢þ
>WENV181049353
ODYD01000055
[ODYD] human metagenome; G_DNA_Supragingival plaque
8627
8703
+
Arg
CCG
[ENA]
¢þ
>WENV181063124
ODYP01000091
[ODYP] human metagenome; G_DNA_Supragingival plaque
3952
4028
+
Arg
CCG
[ENA]
¢þ
>WENV181063135
ODYP01000094
[ODYP] human metagenome; G_DNA_Supragingival plaque
33341
33265
-
Arg
CCG
[ENA]
¢þ
>WENV181066398
ODZI01000013
[ODZI] human metagenome; G_DNA_Supragingival plaque
35567
35491
-
Arg
CCG
[ENA]
¢þ
>WENV181067989
ODZI01090702
[ODZI] human metagenome; G_DNA_Supragingival plaque
123
47
-
Arg
CCG
[ENA]
¢þ
>WENV181075533
OEAP01000024
[OEAP] human metagenome; G_DNA_Supragingival plaque
121244
121320
+
Arg
CCG
[ENA]
¢þ
>WENV181075975
OEAP01000977
[OEAP] human metagenome; G_DNA_Supragingival plaque
8880
8956
+
Arg
CCG
[ENA]
¢þ
>WENV181078467
OEAS01000079
[OEAS] human metagenome; G_DNA_Supragingival plaque
34403
34327
-
Arg
CCG
[ENA]
¢þ
>WENV181078500
OEAS01000102
[OEAS] human metagenome; G_DNA_Supragingival plaque
35559
35635
+
Arg
CCG
[ENA]
¢þ
>WENV181078898
OEAS01000970
[OEAS] human metagenome; G_DNA_Supragingival plaque
11037
10961
-
Arg
CCG
[ENA]
¢þ
>WENV181079067
OEAS01001688
[OEAS] human metagenome; G_DNA_Supragingival plaque
2186
2110
-
Arg
CCG
[ENA]
¢þ
>WENV181079292
OEAS01004275
[OEAS] human metagenome; G_DNA_Supragingival plaque
130
206
+
Arg
CCG
[ENA]
¢þ
>WENV181080829
OEAS01086899
[OEAS] human metagenome; G_DNA_Supragingival plaque
924
848
-
Arg
CCG
[ENA]
¢þ
>WENV181090216
OEBC01000025
[OEBC] human metagenome; G_DNA_Supragingival plaque
86950
86874
-
Arg
CCG
[ENA]
¢þ
>WENV181097741
OECA01023302
[OECA] human metagenome; G_DNA_Tongue dorsum
723
799
+
Arg
CCG
[ENA]
¢þ
>WENV181107034
OEEI01001612
[OEEI] human metagenome; G_DNA_Supragingival plaque
3412
3336
-
Arg
CCG
[ENA]
¢þ
>WENV181115352
OEEO01055013
[OEEO] human metagenome; G_DNA_Supragingival plaque
59
135
+
Arg
CCG
[ENA]
¢þ
>WENV181121860
OEFL01024129
[OEFL] human metagenome; G_DNA_Supragingival plaque
1024
948
-
Arg
CCG
[ENA]
¢þ
>WENV181125411
OEFT01094996
[OEFT] human metagenome; G_DNA_Tongue dorsum
20
96
+
Arg
CCG
[ENA]
¢þ
>WENV181136574
OEGI01013858
[OEGI] human metagenome; G_DNA_Supragingival plaque
756
832
+
Arg
CCG
[ENA]
¢þ
>WENV181137415
OEGJ01003339
[OEGJ] human metagenome; G_DNA_Supragingival plaque
4662
4738
+
Arg
CCG
[ENA]
¢þ
>WENV181145899
OEHQ01000205
[OEHQ] human metagenome; G_DNA_Supragingival plaque
14975
15051
+
Arg
CCG
[ENA]
¢þ
>WENV181152127
OEIA01000142
[OEIA] human metagenome; G_DNA_Supragingival plaque
37369
37445
+
Arg
CCG
[ENA]
¢þ
>WENV181158910
OEIH01016010
[OEIH] human metagenome; G_DNA_Supragingival plaque
934
858
-
Arg
CCG
[ENA]
¢þ
>WENV181178999
OEJT01000899
[OEJT] human metagenome; G_DNA_Supragingival plaque
7817
7893
+
Arg
CCG
[ENA]
¢þ
>WENV181182943
OEJV01085112
[OEJV] human metagenome; G_DNA_Supragingival plaque
145
69
-
Arg
CCG
[ENA]
¢þ
>WENV181371811
OFQW01000577
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1657
1581
-
Arg
CCG
[ENA]
¢þ
>WENV181375589
OFQZ01000214
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
9473
9549
+
Arg
CCG
[ENA]
¢þ
>WENV181375981
OFQZ01010090
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
1173
1249
+
Arg
CCG
[ENA]
¢þ
>WENV181380562
OFRE01000308
[OFRE] wastewater metagenome; Exp Tend NO 50WW
11781
11857
+
Arg
CCG
[ENA]
¢þ
>WENV181389464
OFRO01000072
[OFRO] wastewater metagenome; Exp Tend NO 10WW
30892
30816
-
Arg
CCG
[ENA]
¢þ
>WENV181389809
OFRO01004640
[OFRO] wastewater metagenome; Exp Tend NO 10WW
2502
2578
+
Arg
CCG
[ENA]
¢þ
>WENV181920233
OGYI01057477
[OGYI] human gut metagenome; faeces
86
10
-
Arg
CCG
[ENA]
¢þ
>WENV183508013
OMHA01001684
[OMHA] human oral metagenome; human oral
774
698
-
Arg
CCG
[ENA]
¢þ
>WENV183508788
OMHF01004086
[OMHF] human oral metagenome; human oral
707
631
-
Arg
CCG
[ENA]
¢þ
>WENV183508976
OMHG01000841
[OMHG] human oral metagenome; human oral
2022
1946
-
Arg
CCG
[ENA]
¢þ
>WENV183509739
OMHJ01008829
[OMHJ] human oral metagenome; human oral
44
120
+
Arg
CCG
[ENA]
¢þ
>WENV183510025
OMHL01002842
[OMHL] human oral metagenome; human oral
754
678
-
Arg
CCG
[ENA]
¢þ
>WENV183511137
OMHV01010472
[OMHV] human oral metagenome; human oral
195
271
+
Arg
CCG
[ENA]
¢þ
>WENV183705223
PDWI01001242
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2362
2438
+
Arg
CCG
[ENA]
¢þ
>WENV183717366
PDWJ01000804
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
81423
81499
+
Arg
CCG
[ENA]
¢þ
>WENV170011001
APMI01038662
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
78
154
+
Arg
CCG
[ENA]
¢þ
>WENV170011287
APMI01054044
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4579
4655
+
Arg
CCG
[ENA]
¢þ
>C191173653
CP040003
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 AC001 [CP040003]
698116
698192
+
Arg
CCG
-
¡û
>C191173883
CP040008
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 955 PM004 [CP040008]
679978
680054
+
Arg
CCG
-
¡û
>C191173924
CP040011
Unclassified
TM7 phylum sp. oral taxon 952 TM7x [CP040011]
565699
565775
+
Arg
CCG
-
¡û
>W1911622472
PQOA01000160
Unclassified
Candidatus Nanosynsacchari sp. TM7_G1_3_12Alb bacterium TM7_G1_3_12A [PQOA]
719
643
-
Arg
CCG
[ENA]
¡û
>C151025494
CP007496
Unclassified
Candidatus Nanosynbacter lyticus TM7x [CP007496]
565657
565733
+
Arg
CCG
[Ensembl]
¡û
>C131016118
CP005957
Unclassified
Candidatus Saccharimonas aalborgensis [CP005957]
314335
314411
+
Arg
CCG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK