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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.154943 (47 seq.)
>W131093643
AOMM01000250
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
2512
2596
+
Ser
TGA
[ENA]
¡û
>W131182402
ARQI01000129
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
140328
140244
-
Ser
TGA
[ENA]
¡û
>W131184517
ARSY01000048
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
17050
16966
-
Ser
TGA
[ENA]
¡û
>W1711283066
LZOF01000025
Spirochaetota
Brachyspira hampsonii [LZOF]
72362
72278
-
Ser
TGA
[ENA]
¡û
>W1711283117
LZOG01000175
Spirochaetota
Brachyspira hampsonii [LZOG]
11109
11193
+
Ser
TGA
[ENA]
¡û
>W1711307486
MAOX01000012
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
59467
59383
-
Ser
TGA
[ENA]
¡û
>W1711307518
MAOY01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
58194
58110
-
Ser
TGA
[ENA]
¡û
>W1711351541
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
79265
79349
+
Ser
TGA
[ENA]
¡û
>W1711507036
MKXF01000001
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
65118
65202
+
Ser
TGA
[ENA]
¡û
>WENV180116955
OARB01000444
[OARB] human gut metagenome; ENVO:feces
203
287
+
Ser
TGA
[ENA]
¢þ
>WENV180117783
OARM01000071
[OARM] human gut metagenome; ENVO:feces
5812
5896
+
Ser
TGA
[ENA]
¢þ
>W141037651
ALNZ01000037
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
40482
40398
-
Ser
TGA
[ENA]
¡û
>W141275717
JADF01000002
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
334136
334220
+
Ser
TGA
[ENA]
¡û
>C181038084
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
798798
798714
-
Ser
TGA
-
¡û
>C191017008
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
602275
602191
-
Ser
TGA
-
¡û
>W09108424
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
228261
228177
-
Ser
TGA
[ENA]
¡û
>W1910000013
AFQM01000023
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
17784
17868
+
Ser
TGA
[ENA]
¡û
>W1910569129
JJMJ01000051
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
20774
20690
-
Ser
TGA
[ENA]
¡û
>W1910569212
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
2222317
2222233
-
Ser
TGA
[ENA]
¡û
>W1910574892
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1468125
1468041
-
Ser
TGA
[ENA]
¡û
>C09102352
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
1042005
1041921
-
Ser
TGA
[Ensembl]
¡û
>C10101961
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
890673
890589
-
Ser
TGA
[Ensembl]
¡û
>C10101997
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
161551
161467
-
Ser
TGA
[Ensembl]
¡û
>C11103109
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
1098688
1098772
+
Ser
TGA
[Ensembl]
¡û
>W1510641505
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
1859178
1859094
-
Ser
TGA
[ENA]
¡û
>W1511506955
JXNA01000073
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
17136
17052
-
Ser
TGA
[ENA]
¡û
>W1511506968
JXNB01000022
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
17311
17227
-
Ser
TGA
[ENA]
¡û
>W1511507004
JXNC01000016
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
17488
17404
-
Ser
TGA
[ENA]
¡û
>W1511507043
JXND01000030
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
17310
17226
-
Ser
TGA
[ENA]
¡û
>W1511507071
JXNE01000048
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
106797
106881
+
Ser
TGA
[ENA]
¡û
>W1511507099
JXNF01000025
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
17310
17226
-
Ser
TGA
[ENA]
¡û
>W1511507146
JXNG01000053
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
106996
107080
+
Ser
TGA
[ENA]
¡û
>W1511507200
JXNI01000054
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
117992
118076
+
Ser
TGA
[ENA]
¡û
>W1511507234
JXNJ01000024
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
270259
270343
+
Ser
TGA
[ENA]
¡û
>W1511507259
JXNK01000025
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
81174
81258
+
Ser
TGA
[ENA]
¡û
>W1511507302
JXNL01000129
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
105058
105142
+
Ser
TGA
[ENA]
¡û
>W1511507320
JXNM01000020
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
17488
17404
-
Ser
TGA
[ENA]
¡û
>W1511507352
JXNN01000019
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
14852
14768
-
Ser
TGA
[ENA]
¡û
>W1511507378
JXNO01000014
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
196458
196542
+
Ser
TGA
[ENA]
¡û
>W1511507413
JXNP01000015
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
17311
17227
-
Ser
TGA
[ENA]
¡û
>W1511507442
JXNQ01000003
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
82074
82158
+
Ser
TGA
[ENA]
¡û
>W1511507500
JXNR01000076
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
17530
17446
-
Ser
TGA
[ENA]
¡û
>W1511507503
JXNS01000002
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
17311
17227
-
Ser
TGA
[ENA]
¡û
>C161092129
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
2682391
2682475
+
Ser
TGA
[Ensembl]
¡û
>C131001477
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
496281
496365
+
Ser
TGA
[Ensembl]
¡û
>C131003830
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
1492141
1492057
-
Ser
TGA
[Ensembl]
¡û
>C131019649
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
1413881
1413965
+
Ser
TGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK