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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155111 (32 seq.)
>w025880
ABAJ01000001
Bacillota
Clostridium kluyveri DSM 555 [ABAJ]
2134696
2134772
+
Met
CAT
[ENA]
¡û
>C171077656
CP018335
Bacillota
Clostridium kluyveri JZZ [CP018335]
248267
248343
+
Met
CAT
-
¡û
>C171111451
CP020705
Bacillota
Ruminococcaceae bacterium CPB6 [CP020705]
2055729
2055653
-
Met
CAT
-
¡û
>WENV180420280
OBVO01001500
[OBVO] human gut metagenome; faeces
4974
4898
-
Met
CAT
[ENA]
¢þ
>WENV180826878
ODJZ01063763
[ODJZ] human metagenome; G_DNA_Stool
259
335
+
Met
CAT
[ENA]
¢þ
>WENV180829599
ODKA01255698
[ODKA] human metagenome; G_DNA_Stool
226
150
-
Met
CAT
[ENA]
¢þ
>WENV181100277
OECI01188079
[OECI] human metagenome; G_DNA_Stool
151
227
+
Met
CAT
[ENA]
¢þ
>WENV181895693
OGXR01021703
[OGXR] human gut metagenome; faeces
1313
1389
+
Met
CAT
[ENA]
¢þ
>WENV181948473
OGZE01004458
[OGZE] human gut metagenome; faeces
4415
4491
+
Met
CAT
[ENA]
¢þ
>WENV181965780
OGZT01003531
[OGZT] human gut metagenome; faeces
4428
4504
+
Met
CAT
[ENA]
¢þ
>C08003355
CP000673
Bacillota
Clostridium kluyveri DSM 555 [CP000673]
154936
155012
+
Met
CAT
[Ensembl]
¡û
>WENV182772621
OJRY01003388
[OJRY] human gut metagenome; human gut
2790
2866
+
Met
CAT
[ENA]
¢þ
>WENV182773746
OJRZ01003167
[OJRZ] human gut metagenome; human gut
8819
8895
+
Met
CAT
[ENA]
¢þ
>WENV182775155
OJSA01007229
[OJSA] human gut metagenome; human gut
3584
3660
+
Met
CAT
[ENA]
¢þ
>WENV182776249
OJSB01004355
[OJSB] human gut metagenome; human gut
1318
1394
+
Met
CAT
[ENA]
¢þ
>WENV182782007
OJSE01027486
[OJSE] human gut metagenome; human gut
1394
1318
-
Met
CAT
[ENA]
¢þ
>WENV182783249
OJSF01034434
[OJSF] human gut metagenome; human gut
104
180
+
Met
CAT
[ENA]
¢þ
>WENV183091912
OLKG01008881
[OLKG] human gut metagenome; human gut
207
131
-
Met
CAT
[ENA]
¢þ
>WENV183280620
OLSB01007730
[OLSB] human gut metagenome; faeces
3640
3716
+
Met
CAT
[ENA]
¢þ
>WENV183421677
OMBC01004287
[OMBC] human gut metagenome; feces
1107
1183
+
Met
CAT
[ENA]
¢þ
>WENV183499207
OMGP01004223
[OMGP] human gut metagenome; human gut
6413
6489
+
Met
CAT
[ENA]
¢þ
>WENV170636164
JFBN01059871
[JFBN] chicken gut metagenome; ceca of Broiler chicken
556
480
-
Met
CAT
[ENA]
¢þ
>WENV170670208
LAHS01109082
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
230
306
+
Met
CAT
[ENA]
¢þ
>C181136150
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2754788
2754712
-
Met
CAT
-
¡û
>C181136153
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
2754509
2754433
-
Met
CAT
-
¡û
>W1910227373
FNLI01000021
Bacillota
Merdimmobilis hominis Marseille-P2769 [FNLI]
27668
27592
-
Met
CAT
[ENA]
¡û
>W1910228892
FNWA01000006
Bacillota
Ruminococcaceae bacterium Marseille-P2935 [FNWA]
41417
41341
-
Met
CAT
[ENA]
¡û
>C09103268
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
154936
155012
+
Met
CAT
[Ensembl]
¡û
>W1610058624
BBZZ01000005
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
135054
135130
+
Met
CAT
[ENA]
¡û
>W1710055383
BBZZ01000005
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
135054
135130
+
Met
CAT
[ENA]
¡û
>W1710546501
FOCG01000002
Bacillota
Hydrogenoanaerobacterium saccharovorans [FOCG]
45005
44929
-
Met
CAT
[ENA]
¡û
>W1710565686
FORK01000003
Bacillota
Ruminococcaceae bacterium D5 [FORK]
145443
145367
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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