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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155113 (142 seq.)
>WENV180182978
OAWP01001418
[OAWP] human gut metagenome; faeces
1097
1173
+
Pro
CGG
[ENA]
¢þ
>WENV180245905
OBDN01003183
[OBDN] human gut metagenome; human gut
749
673
-
Pro
CGG
[ENA]
¢þ
>WENV180323554
OBKR01043570
[OBKR] human gut metagenome; feces
694
770
+
Pro
CGG
[ENA]
¢þ
>WENV180330247
OBKV01032848
[OBKV] human gut metagenome; human gut
224
300
+
Pro
CGG
[ENA]
¢þ
>WENV180331067
OBKW01009039
[OBKW] human gut metagenome; human gut
594
670
+
Pro
CGG
[ENA]
¢þ
>WENV180428427
OBWC01000246
[OBWC] human gut metagenome; faeces
2697
2773
+
Pro
CGG
[ENA]
¢þ
>WENV180435259
OBWL01019059
[OBWL] human gut metagenome; faeces
609
533
-
Pro
CGG
[ENA]
¢þ
>WENV180479667
OBZC01011047
[OBZC] human gut metagenome; faeces
1376
1300
-
Pro
CGG
[ENA]
¢þ
>WENV180536587
OCHN01021580
[OCHN] human gut metagenome; human gut
897
973
+
Pro
CGG
[ENA]
¢þ
>WENV180546616
OCIU01002669
[OCIU] human gut metagenome; human gut
5847
5923
+
Pro
CGG
[ENA]
¢þ
>WENV180702005
ODEE01001285
[ODEE] human metagenome; G_DNA_Stool
13766
13690
-
Pro
CGG
[ENA]
¢þ
>WENV180741818
ODHH01000572
[ODHH] human metagenome; G_DNA_Stool
22679
22755
+
Pro
CGG
[ENA]
¢þ
>WENV180747092
ODHN01001845
[ODHN] human metagenome; G_DNA_Stool
2759
2835
+
Pro
CGG
[ENA]
¢þ
>WENV180818092
ODJQ01008036
[ODJQ] human metagenome; G_DNA_Stool
3939
3863
-
Pro
CGG
[ENA]
¢þ
>WENV180826974
ODJZ01135935
[ODJZ] human metagenome; G_DNA_Stool
131
207
+
Pro
CGG
[ENA]
¢þ
>WENV180870606
ODLN01003221
[ODLN] human metagenome; G_DNA_Stool
1798
1874
+
Pro
CGG
[ENA]
¢þ
>WENV180876033
ODLT01002257
[ODLT] human metagenome; G_DNA_Stool
1478
1554
+
Pro
CGG
[ENA]
¢þ
>WENV180893395
ODMR01005404
[ODMR] human metagenome; G_DNA_Stool
2718
2794
+
Pro
CGG
[ENA]
¢þ
>WENV180956866
ODUK01004818
[ODUK] human metagenome; G_DNA_Stool
3743
3819
+
Pro
CGG
[ENA]
¢þ
>WENV180970897
ODUU01009201
[ODUU] human metagenome; G_DNA_Stool
1914
1838
-
Pro
CGG
[ENA]
¢þ
>WENV180972320
ODUU01405495
[ODUU] human metagenome; G_DNA_Stool
111
35
-
Pro
CGG
[ENA]
¢þ
>WENV181037545
ODXP01114457
[ODXP] human metagenome; G_DNA_Stool
138
214
+
Pro
CGG
[ENA]
¢þ
>WENV181133949
OEGF01008159
[OEGF] human metagenome; G_DNA_Stool
2717
2793
+
Pro
CGG
[ENA]
¢þ
>WENV181397895
OFSD01009900
[OFSD] human gut metagenome; human gut
2721
2797
+
Pro
CGG
[ENA]
¢þ
>WENV181422106
OGCO01000605
[OGCO] human gut metagenome; human gut
57172
57096
-
Pro
CGG
[ENA]
¢þ
>WENV181436094
OGDF01010503
[OGDF] human gut metagenome; human gut
4720
4644
-
Pro
CGG
[ENA]
¢þ
>WENV181440789
OGDN01002201
[OGDN] human gut metagenome; human gut
14625
14701
+
Pro
CGG
[ENA]
¢þ
>WENV181445495
OGDS01004943
[OGDS] metagenome; Human gut stool
3017
2941
-
Pro
CGG
[ENA]
¢þ
>WENV181460199
OGEL01004943
[OGEL] metagenome; Human gut stool
3017
2941
-
Pro
CGG
[ENA]
¢þ
>WENV181477665
OGFF01003266
[OGFF] metagenome; Human gut stool
1755
1831
+
Pro
CGG
[ENA]
¢þ
>WENV181479273
OGFG01001411
[OGFG] metagenome; Human gut stool
10968
10892
-
Pro
CGG
[ENA]
¢þ
>WENV181517448
OGGZ01007289
[OGGZ] metagenome; Human gut stool
1552
1476
-
Pro
CGG
[ENA]
¢þ
>WENV181531720
OGHO01008460
[OGHO] metagenome; Human gut stool
2026
1950
-
Pro
CGG
[ENA]
¢þ
>WENV181548338
OGIK01000091
[OGIK] metagenome; Human gut stool
58199
58123
-
Pro
CGG
[ENA]
¢þ
>WENV181586534
OGKG01001993
[OGKG] metagenome; Human gut stool
19937
19861
-
Pro
CGG
[ENA]
¢þ
>WENV181603918
OGLI01002767
[OGLI] metagenome; Human gut stool
2719
2795
+
Pro
CGG
[ENA]
¢þ
>WENV181607264
OGLM01005402
[OGLM] metagenome; Human gut stool
7288
7212
-
Pro
CGG
[ENA]
¢þ
>WENV181630082
OGMP01031946
[OGMP] metagenome; Human gut stool
79
155
+
Pro
CGG
[ENA]
¢þ
>WENV181656439
OGOC01000493
[OGOC] human gut metagenome; faeces
15053
15129
+
Pro
CGG
[ENA]
¢þ
>WENV181659282
OGOE01004669
[OGOE] human gut metagenome; faeces
2719
2795
+
Pro
CGG
[ENA]
¢þ
>WENV181662022
OGOG01012973
[OGOG] human gut metagenome; faeces
2320
2244
-
Pro
CGG
[ENA]
¢þ
>WENV181667275
OGOK01007193
[OGOK] human gut metagenome; faeces
2993
2917
-
Pro
CGG
[ENA]
¢þ
>WENV181669004
OGOL01007206
[OGOL] human gut metagenome; faeces
5299
5223
-
Pro
CGG
[ENA]
¢þ
>WENV181712340
OGPP01028803
[OGPP] human gut metagenome; faeces
740
664
-
Pro
CGG
[ENA]
¢þ
>WENV181715242
OGPR01069032
[OGPR] human gut metagenome; faeces
106
182
+
Pro
CGG
[ENA]
¢þ
>WENV181729427
OGQB01006041
[OGQB] human gut metagenome; faeces
4387
4463
+
Pro
CGG
[ENA]
¢þ
>WENV181730573
OGQC01005741
[OGQC] human gut metagenome; faeces
229
305
+
Pro
CGG
[ENA]
¢þ
>WENV181748399
OGQO01002235
[OGQO] human gut metagenome; faeces
11886
11810
-
Pro
CGG
[ENA]
¢þ
>WENV181759259
OGQU01028885
[OGQU] human gut metagenome; faeces
30
106
+
Pro
CGG
[ENA]
¢þ
>WENV181780063
OGRI01060776
[OGRI] human gut metagenome; faeces
219
295
+
Pro
CGG
[ENA]
¢þ
>WENV181792279
OGRQ01006223
[OGRQ] human gut metagenome; faeces
2687
2611
-
Pro
CGG
[ENA]
¢þ
>WENV181799444
OGRY01001133
[OGRY] human gut metagenome; faeces
1554
1630
+
Pro
CGG
[ENA]
¢þ
>WENV181830691
OGUO01009049
[OGUO] human gut metagenome; faeces
119
43
-
Pro
CGG
[ENA]
¢þ
>WENV181867160
OGWV01048450
[OGWV] human gut metagenome; faeces
232
156
-
Pro
CGG
[ENA]
¢þ
>WENV181870688
OGWY01020598
[OGWY] human gut metagenome; faeces
622
698
+
Pro
CGG
[ENA]
¢þ
>WENV181897113
OGXS01031456
[OGXS] human gut metagenome; faeces
176
100
-
Pro
CGG
[ENA]
¢þ
>WENV181902704
OGXW01076431
[OGXW] human gut metagenome; faeces
684
608
-
Pro
CGG
[ENA]
¢þ
>WENV181912904
OGYE01001567
[OGYE] human gut metagenome; faeces
14643
14719
+
Pro
CGG
[ENA]
¢þ
>WENV181948710
OGZE01025955
[OGZE] human gut metagenome; faeces
941
1014
+
Pro
CGG
[ENA]
¢þ
>WENV181962299
OGZO01122872
[OGZO] human gut metagenome; faeces
448
524
+
Pro
CGG
[ENA]
¢þ
>WENV182045000
OHDS01004434
[OHDS] human gut metagenome; feces
2857
2781
-
Pro
CGG
[ENA]
¢þ
>WENV182057912
OHEP01000916
[OHEP] human gut metagenome; feces
16245
16169
-
Pro
CGG
[ENA]
¢þ
>WENV182073569
OHFO01027108
[OHFO] human gut metagenome; feces
203
127
-
Pro
CGG
[ENA]
¢þ
>WENV182081514
OHGK01001098
[OHGK] human gut metagenome; feces
3739
3815
+
Pro
CGG
[ENA]
¢þ
>WENV182097973
OHHP01007043
[OHHP] human gut metagenome; feces
1606
1530
-
Pro
CGG
[ENA]
¢þ
>WENV182125361
OHJS01003943
[OHJS] human gut metagenome; feces
975
1051
+
Pro
CGG
[ENA]
¢þ
>WENV182154762
OHLP01009004
[OHLP] human gut metagenome; feces
156
232
+
Pro
CGG
[ENA]
¢þ
>WENV182162498
OHMH01001178
[OHMH] human gut metagenome; feces
107
183
+
Pro
CGG
[ENA]
¢þ
>WENV182193199
OHPB01001206
[OHPB] human gut metagenome; feces
11592
11516
-
Pro
CGG
[ENA]
¢þ
>WENV182219393
OHQR01001183
[OHQR] human gut metagenome; feces
2718
2794
+
Pro
CGG
[ENA]
¢þ
>WENV182396726
OIEM01000893
[OIEM] human gut metagenome; human gut
970
1046
+
Pro
CGG
[ENA]
¢þ
>WENV182416715
OIGD01002787
[OIGD] human gut metagenome; human gut
2718
2794
+
Pro
CGG
[ENA]
¢þ
>WENV182421049
OIGP01004258
[OIGP] human gut metagenome; human gut
1086
1162
+
Pro
CGG
[ENA]
¢þ
>WENV182427361
OIHU01011202
[OIHU] human gut metagenome; human gut
94
18
-
Pro
CGG
[ENA]
¢þ
>WENV182431738
OIIJ01002481
[OIIJ] human gut metagenome; human gut
1275
1199
-
Pro
CGG
[ENA]
¢þ
>WENV182479491
OIQT01002443
[OIQT] human gut metagenome; human gut
870
794
-
Pro
CGG
[ENA]
¢þ
>WENV182501714
OIUE01001409
[OIUE] human gut metagenome; human gut
987
1063
+
Pro
CGG
[ENA]
¢þ
>WENV182507126
OIVJ01006421
[OIVJ] human gut metagenome; human gut
423
347
-
Pro
CGG
[ENA]
¢þ
>WENV182507296
OIVK01003624
[OIVK] human gut metagenome; human gut
757
833
+
Pro
CGG
[ENA]
¢þ
>WENV182655040
OJMI01016226
[OJMI] human gut metagenome; feces
2468
2392
-
Pro
CGG
[ENA]
¢þ
>WENV182658720
OJML01000462
[OJML] human gut metagenome; feces
22893
22817
-
Pro
CGG
[ENA]
¢þ
>WENV182683082
OJNW01058818
[OJNW] human gut metagenome; human gut
4
80
+
Pro
CGG
[ENA]
¢þ
>WENV182695096
OJOI01032459
[OJOI] human gut metagenome; human gut
744
668
-
Pro
CGG
[ENA]
¢þ
>WENV182712316
OJPF01000080
[OJPF] human gut metagenome; stool sample
54639
54715
+
Pro
CGG
[ENA]
¢þ
>WENV182718109
OJPL01021178
[OJPL] human gut metagenome; stool sample
784
860
+
Pro
CGG
[ENA]
¢þ
>WENV182720319
OJPN01007299
[OJPN] human gut metagenome; stool sample
2728
2804
+
Pro
CGG
[ENA]
¢þ
>WENV182758487
OJRI01003814
[OJRI] human gut metagenome; stool sample
3667
3743
+
Pro
CGG
[ENA]
¢þ
>WENV182774107
OJRZ01020711
[OJRZ] human gut metagenome; human gut
1041
1117
+
Pro
CGG
[ENA]
¢þ
>WENV182775434
OJSA01031889
[OJSA] human gut metagenome; human gut
778
854
+
Pro
CGG
[ENA]
¢þ
>WENV182776356
OJSB01008658
[OJSB] human gut metagenome; human gut
1672
1596
-
Pro
CGG
[ENA]
¢þ
>WENV182870525
OKRU01001807
[OKRU] human gut metagenome; faeces
4892
4968
+
Pro
CGG
[ENA]
¢þ
>WENV182874772
OKRW01032470
[OKRW] human gut metagenome; faeces
360
436
+
Pro
CGG
[ENA]
¢þ
>WENV182889103
OKSE01036721
[OKSE] human gut metagenome; faeces
58
134
+
Pro
CGG
[ENA]
¢þ
>WENV182969563
OKXB01038881
[OKXB] human gut metagenome; human gut
264
340
+
Pro
CGG
[ENA]
¢þ
>WENV182970776
OKXF01002236
[OKXF] human gut metagenome; human gut
1537
1613
+
Pro
CGG
[ENA]
¢þ
>WENV182977554
OKYE01005162
[OKYE] human gut metagenome; human gut
922
997
+
Pro
CGG
[ENA]
¢þ
>WENV182983327
OKZF01001011
[OKZF] human gut metagenome; human gut
2431
2355
-
Pro
CGG
[ENA]
¢þ
>WENV183025366
OLFT01010205
[OLFT] human gut metagenome; faeces
2893
2817
-
Pro
CGG
[ENA]
¢þ
>WENV183070005
OLIR01010079
[OLIR] metagenome; faeces
111
187
+
Pro
CGG
[ENA]
¢þ
>WENV183071022
OLIS01001845
[OLIS] human gut metagenome; feces
814
890
+
Pro
CGG
[ENA]
¢þ
>WENV183124241
OLNW01008940
[OLNW] human gut metagenome; faeces
2754
2678
-
Pro
CGG
[ENA]
¢þ
>WENV183125774
OLNY01001761
[OLNY] human gut metagenome; faeces
2727
2803
+
Pro
CGG
[ENA]
¢þ
>WENV183143095
OLOK01007616
[OLOK] human gut metagenome; faeces
3739
3815
+
Pro
CGG
[ENA]
¢þ
>WENV183154599
OLOR01007461
[OLOR] human gut metagenome; faeces
3676
3752
+
Pro
CGG
[ENA]
¢þ
>WENV183165143
OLOX01002555
[OLOX] human gut metagenome; faeces
3674
3750
+
Pro
CGG
[ENA]
¢þ
>WENV183172440
OLPC01011678
[OLPC] human gut metagenome; faeces
82
6
-
Pro
CGG
[ENA]
¢þ
>WENV183176296
OLPF01004571
[OLPF] human gut metagenome; faeces
1435
1511
+
Pro
CGG
[ENA]
¢þ
>WENV183193374
OLPS01003110
[OLPS] human gut metagenome; faeces
2717
2793
+
Pro
CGG
[ENA]
¢þ
>WENV183241258
OLRA01076974
[OLRA] human gut metagenome; faeces
376
452
+
Pro
CGG
[ENA]
¢þ
>WENV183245548
OLRE01004966
[OLRE] human gut metagenome; faeces
3963
3887
-
Pro
CGG
[ENA]
¢þ
>WENV183268844
OLRU01028697
[OLRU] human gut metagenome; faeces
1462
1386
-
Pro
CGG
[ENA]
¢þ
>WENV183288228
OLSF01038975
[OLSF] human gut metagenome; faeces
254
330
+
Pro
CGG
[ENA]
¢þ
>WENV183293790
OLSK01001855
[OLSK] human gut metagenome; faeces
11809
11733
-
Pro
CGG
[ENA]
¢þ
>WENV183321003
OLVW01005517
[OLVW] human gut metagenome; faeces
3943
3867
-
Pro
CGG
[ENA]
¢þ
>WENV183327558
OLWA01001008
[OLWA] human gut metagenome; faeces
28770
28694
-
Pro
CGG
[ENA]
¢þ
>WENV183363973
OLXL01067536
[OLXL] human gut metagenome; feces
21
97
+
Pro
CGG
[ENA]
¢þ
>WENV183375948
OLYA01039304
[OLYA] human gut metagenome; feces
527
603
+
Pro
CGG
[ENA]
¢þ
>WENV183388312
OLYY01049310
[OLYY] human gut metagenome; feces
473
397
-
Pro
CGG
[ENA]
¢þ
>WENV183415302
OMAQ01007236
[OMAQ] human gut metagenome; feces
2179
2255
+
Pro
CGG
[ENA]
¢þ
>WENV183442557
OMCM01000408
[OMCM] human gut metagenome; feces
26285
26361
+
Pro
CGG
[ENA]
¢þ
>WENV183455529
OMDJ01000380
[OMDJ] human gut metagenome; feces
26284
26360
+
Pro
CGG
[ENA]
¢þ
>WENV183461107
OMDR01001903
[OMDR] human gut metagenome; feces
3805
3881
+
Pro
CGG
[ENA]
¢þ
>WENV183462606
OMDW01044317
[OMDW] human gut metagenome; feces
284
208
-
Pro
CGG
[ENA]
¢þ
>WENV183472179
OMEQ01001367
[OMEQ] human gut metagenome; feces
6394
6470
+
Pro
CGG
[ENA]
¢þ
>WENV183477575
OMFC01004259
[OMFC] human gut metagenome; feces
2999
2923
-
Pro
CGG
[ENA]
¢þ
>WENV183480046
OMFI01004776
[OMFI] human gut metagenome; feces
36
112
+
Pro
CGG
[ENA]
¢þ
>WENV183545219
OOAQ01000931
[OOAQ] human gut metagenome; human gut
2719
2795
+
Pro
CGG
[ENA]
¢þ
>WENV183561769
OOBV01003312
[OOBV] human gut metagenome; human gut
4236
4160
-
Pro
CGG
[ENA]
¢þ
>WENV183575162
OOCI01000537
[OOCI] human gut metagenome; human gut
8933
8857
-
Pro
CGG
[ENA]
¢þ
>WENV183600794
OODI01073651
[OODI] human gut metagenome; human gut
426
350
-
Pro
CGG
[ENA]
¢þ
>WENV170037294
CDYQ01006256
[CDYQ] gut metagenome; human stools
103099
103175
+
Pro
CGG
[ENA]
¢þ
>WENV170110185
CECF01014810
[CECF] gut metagenome; human stools
2376
2300
-
Pro
CGG
[ENA]
¢þ
>C181115554
CP025286
Bacillota
Ethanoligenens harbinense YUAN-3 [CP025286]
1226822
1226898
+
Pro
CGG
-
¡û
>C191031557
CP025287
Bacillota
Ethanoligenens harbinense B49 [CP025287]
1191986
1192062
+
Pro
CGG
-
¡û
>C191031612
CP025288
Bacillota
Ethanoligenens harbinense X-29 [CP025288]
1226751
1226827
+
Pro
CGG
-
¡û
>C191072223
CP030278
Bacillota
Ethanoligenens harbinense W1 [CP030278]
1226818
1226894
+
Pro
CGG
-
¡û
>W1910227342
FNLI01000010
Bacillota
Merdimmobilis hominis Marseille-P2769 [FNLI]
52352
52428
+
Pro
CGG
[ENA]
¡û
>W10115285
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
16924
16848
-
Pro
CGG
[ENA]
¡û
>C11108750
CP002400
Bacillota
Ethanoligenens harbinense YUAN-3 [CP002400]
1226819
1226895
+
Pro
CGG
[Ensembl]
¡û
>W11118871
ADJQ01000004
Bacillota
Ethanoligenens harbinense YUAN-3 [ADJQ]
16924
16848
-
Pro
CGG
[ENA]
¡û
>W1610058611
BBZZ01000001
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
223287
223211
-
Pro
CGG
[ENA]
¡û
>W1710055370
BBZZ01000001
Bacillota
Clostridia bacterium UC5.1-2F7 [BBZZ]
223287
223211
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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