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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155329 (43 seq.)
>W131001363
AGYD01000001
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
459
383
-
Ile
GAT
[ENA]
¡û
>W131001400
AGYD01000015
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
144248
144324
+
Ile
GAT
[ENA]
¡û
>W131171338
ARGD01000016
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
2033
2109
+
Ile
GAT
[ENA]
¡û
>WENV180119038
OASD01005788
[OASD] human gut metagenome; ENVO:feces
2342
2418
+
Ile
GAT
[ENA]
¢þ
>WENV180198372
OBAC01052321
[OBAC] human gut metagenome; ENVO:feces
134
210
+
Ile
GAT
[ENA]
¢þ
>WENV180403578
OBRT01002122
[OBRT] human gut metagenome; ENVO:feces
3079
3003
-
Ile
GAT
[ENA]
¢þ
>WENV180405364
OBTM01002595
[OBTM] human gut metagenome; ENVO:feces
2338
2414
+
Ile
GAT
[ENA]
¢þ
>WENV180596981
OCPK01000137
[OCPK] human gut metagenome; ENVO:feces
9262
9186
-
Ile
GAT
[ENA]
¢þ
>WENV180597412
OCPL01000398
[OCPL] human gut metagenome; ENVO:feces
4528
4604
+
Ile
GAT
[ENA]
¢þ
>WENV180786420
ODIR01236391
[ODIR] human metagenome; G_DNA_Stool
139
215
+
Ile
GAT
[ENA]
¢þ
>WENV180967031
ODUS01006565
[ODUS] human metagenome; G_DNA_L_Retroauricular crease
260
184
-
Ile
GAT
[ENA]
¢þ
>WENV181119374
OEFH01202514
[OEFH] human metagenome; G_DNA_Stool
72
148
+
Ile
GAT
[ENA]
¢þ
>WENV181811416
OGSY01001802
[OGSY] human gut metagenome; fecal sample 5 from infant 8
3833
3757
-
Ile
GAT
[ENA]
¢þ
>C08003167
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
74235
74311
+
Ile
GAT
[Ensembl]
¡û
>C08003171
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
413360
413436
+
Ile
GAT
[Ensembl]
¡û
>C08003194
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1446921
1446848
-
Ile
GAT
[Ensembl]
¡û
>WENV183721025
PDWJ01052683
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1329
1253
-
Ile
GAT
[ENA]
¢þ
>W141463424
JFJK01000010
Campylobacterota
Campylobacter ureolyticus [JFJK]
3569
3493
-
Ile
GAT
[ENA]
¡û
>C181038839
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
610255
610331
+
Ile
GAT
-
¡û
>C181038854
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
1501414
1501338
-
Ile
GAT
-
¡û
>C181038869
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
929034
928958
-
Ile
GAT
-
¡û
>C181038883
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
609119
609195
+
Ile
GAT
-
¡û
>C181038899
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
1557659
1557583
-
Ile
GAT
-
¡û
>C181038914
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
934633
934557
-
Ile
GAT
-
¡û
>C181038928
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
616430
616506
+
Ile
GAT
-
¡û
>C181038944
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
1528784
1528708
-
Ile
GAT
-
¡û
>C181038959
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
934752
934676
-
Ile
GAT
-
¡û
>C181038973
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
580196
580272
+
Ile
GAT
-
¡û
>C181038988
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
1478970
1478894
-
Ile
GAT
-
¡û
>C181039003
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
891217
891141
-
Ile
GAT
-
¡û
>W1810056867
PDHH01000012
Campylobacterota
Campylobacter blaseri 17S00004-5 [PDHH]
2036
2112
+
Ile
GAT
[ENA]
¡û
>W1810056904
PDHI01000011
Campylobacterota
Campylobacter blaseri 17S00008-12 [PDHI]
2036
2112
+
Ile
GAT
[ENA]
¡û
>W1810187721
PKHU01000005
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
179433
179357
-
Ile
GAT
[ENA]
¡û
>C151092501
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
495068
495144
+
Ile
GAT
-
¡û
>C151092504
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
645380
645456
+
Ile
GAT
-
¡û
>C151092518
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1535857
1535781
-
Ile
GAT
-
¡û
>W1511205875
JMTI01000021
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
513
437
-
Ile
GAT
[ENA]
¡û
>W1610419722
FIZO01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
8093
8017
-
Ile
GAT
[ENA]
¡û
>W1610419771
FIZP01000025
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
4637
4561
-
Ile
GAT
[ENA]
¡û
>W1610419774
FIZQ01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
212764
212840
+
Ile
GAT
[ENA]
¡û
>W1710419458
FIZO01000005
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
8093
8017
-
Ile
GAT
[ENA]
¡û
>W1710419507
FIZP01000025
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
4637
4561
-
Ile
GAT
[ENA]
¡û
>W1710419510
FIZQ01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
212764
212840
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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