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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155757 (34 seq.)
>WENV180015930
FSTQ01000451
[FSTQ] metagenome; soil
5168
5243
+
Pro
GGG
[ENA]
¢þ
>WENV180019961
FTCS01002826
[FTCS] metagenome; soil
8488
8563
+
Pro
GGG
[ENA]
¢þ
>WENV180022192
FTFT01002099
[FTFT] metagenome; soil
272
347
+
Pro
GGG
[ENA]
¢þ
>WENV180028989
FTJI01001228
[FTJI] metagenome; soil
503
428
-
Pro
GGG
[ENA]
¢þ
>WENV180034513
FTKR01001221
[FTKR] metagenome; soil
503
428
-
Pro
GGG
[ENA]
¢þ
>WENV180291820
OBIV01188968
[OBIV] soil metagenome; Clay
96
171
+
Pro
GGG
[ENA]
¢þ
>W141073142
ASRX01000077
Myxococcota
Chondromyces apiculatus DSM 436 [ASRX]
40535
40610
+
Pro
GGG
[ENA]
¡û
>WENV181171871
OEIV010388664
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
130
55
-
Pro
GGG
[ENA]
¢þ
>C08008958
AM746676
Myxococcota
Sorangium cellulosum So ce56 So ce 56 [AM746676]
2383695
2383620
-
Pro
GGG
[Ensembl]
¡û
>WENV170649585
JRYC01029460
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
405
480
+
Pro
GGG
[ENA]
¢þ
>C181012527
CP012673
Myxococcota
Sorangium cellulosum So ce26 [CP012673]
2965769
2965694
-
Pro
GGG
-
¡û
>C191010050
CP012670
Myxococcota
Sorangium cellulosum So ceGT47 [CP012670]
2091103
2091028
-
Pro
GGG
-
¡û
>C191010107
CP012672
Myxococcota
Sorangium cellulosum So ce836 [CP012672]
3069273
3069198
-
Pro
GGG
-
¡û
>SRA1012682
SRR020493.395140
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
113
36
-
Pro
GGG
[SRA]
>SRA1012978
SRR020494.33008
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
113
36
-
Pro
GGG
[SRA]
>C151092019
CP012159
Myxococcota
Chondromyces crocatus Cm c5 [CP012159]
4156277
4156202
-
Pro
GGG
-
¡û
>C151093451
CP012333
Myxococcota
Labilithrix luteola DSM 27648 [CP012333]
8608914
8608989
+
Pro
GGG
-
¡û
>C131010794
CP003969
Myxococcota
Sorangium cellulosum So0157-2 [CP003969]
3020130
3020055
-
Pro
GGG
[Ensembl]
¡û
>W1610520394
JELX01001777
Myxococcota
Sorangium cellulosum [JELX]
1909
1834
-
Pro
GGG
[ENA]
¡û
>W1610520449
JELY01002555
Myxococcota
Sorangium cellulosum [JELY]
119
194
+
Pro
GGG
[ENA]
¡û
>W1610520500
JELZ01002269
Myxococcota
Sorangium cellulosum [JELZ]
2904
2829
-
Pro
GGG
[ENA]
¡û
>W1610520542
JEMA01000840
Myxococcota
Sorangium cellulosum [JEMA]
12191
12116
-
Pro
GGG
[ENA]
¡û
>W1610520578
JEMB01001863
Myxococcota
Sorangium cellulosum [JEMB]
628
553
-
Pro
GGG
[ENA]
¡û
>W1610520657
JEMC01003888
Myxococcota
Sorangium cellulosum [JEMC]
336
411
+
Pro
GGG
[ENA]
¡û
>W1610520669
JEMD01001293
Myxococcota
Sorangium cellulosum [JEMD]
603
678
+
Pro
GGG
[ENA]
¡û
>W1610520736
JEME01001697
Myxococcota
Sorangium cellulosum [JEME]
2981
2906
-
Pro
GGG
[ENA]
¡û
>W1710615872
JELX01001777
Myxococcota
Sorangium cellulosum [JELX]
1909
1834
-
Pro
GGG
[ENA]
¡û
>W1710615927
JELY01002555
Myxococcota
Sorangium cellulosum [JELY]
119
194
+
Pro
GGG
[ENA]
¡û
>W1710615978
JELZ01002269
Myxococcota
Sorangium cellulosum [JELZ]
2904
2829
-
Pro
GGG
[ENA]
¡û
>W1710616020
JEMA01000840
Myxococcota
Sorangium cellulosum [JEMA]
12191
12116
-
Pro
GGG
[ENA]
¡û
>W1710616056
JEMB01001863
Myxococcota
Sorangium cellulosum [JEMB]
628
553
-
Pro
GGG
[ENA]
¡û
>W1710616135
JEMC01003888
Myxococcota
Sorangium cellulosum [JEMC]
336
411
+
Pro
GGG
[ENA]
¡û
>W1710616147
JEMD01001293
Myxococcota
Sorangium cellulosum [JEMD]
603
678
+
Pro
GGG
[ENA]
¡û
>W1710616214
JEME01001697
Myxococcota
Sorangium cellulosum [JEME]
2981
2906
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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