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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155902 (17 seq.)
>C171115920
CP021112
Alphaproteobacteria
Pseudorhodoplanes sinuspersici RIPI110 [CP021112]
2623396
2623472
+
His
GTG
-
¡û
>WENV180309009
OBJR01423871
[OBJR] soil metagenome; soil
17
93
+
His
GTG
[ENA]
¢þ
>WENV180309051
OBJR01465454
[OBJR] soil metagenome; soil
103
27
-
His
GTG
[ENA]
¢þ
>WENV180353057
OBLQ010520181
[OBLQ] soil metagenome; soil
115
191
+
His
GTG
[ENA]
¢þ
>WENV181123099
OEFO01097504
[OEFO] soil metagenome; soil
207
131
-
His
GTG
[ENA]
¢þ
>WENV181145100
OEHO01194228
[OEHO] metagenome; unknown
148
72
-
His
GTG
[ENA]
¢þ
>WENV181165300
OEIR01719601
[OEIR] soil metagenome; soil
134
58
-
His
GTG
[ENA]
¢þ
>WENV181168536
OEIU01454601
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
72
148
+
His
GTG
[ENA]
¢þ
>WENV183666302
ORJL010539818
[ORJL] groundwater metagenome; groundwater
160
84
-
His
GTG
[ENA]
¢þ
>C191005668
AP018907
Alphaproteobacteria
Blastochloris tepida GI [AP018907]
52204
52280
+
His
GTG
-
¡û
>W1911148382
NPEU01000304
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
2186
2110
-
His
GTG
[ENA]
¡û
>W1911148465
NPEW01000100
Alphaproteobacteria
Rhodoplanes serenus DSM 19946 [NPEW]
13467
13391
-
His
GTG
[ENA]
¡û
>W1911148525
NPEX01000287
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
336
260
-
His
GTG
[ENA]
¡û
>C161001676
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
944234
944158
-
His
GTG
[Ensembl]
¡û
>C161048002
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
350326
350402
+
His
GTG
-
¡û
>C161108093
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
3473525
3473601
+
His
GTG
[Ensembl]
¡û
>W121103211
AKZI01000048
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
24566
24490
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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