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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155980 (62 seq.)
>W1710901181
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
67926
67850
-
Asp
GTC
[ENA]
¡û
>W1710901185
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
67370
67294
-
Asp
GTC
[ENA]
¡û
>W131160039
AQWF01000003
Campylobacterota
Sulfurovum sp. SCGC AAA036-F05 [AQWF]
1707
1783
+
Asp
GTC
[ENA]
¡û
>W131160044
AQWF01000003
Campylobacterota
Sulfurovum sp. SCGC AAA036-F05 [AQWF]
2292
2368
+
Asp
GTC
[ENA]
¡û
>WENV180274919
OBHO01007659
[OBHO] metagenome; water
204
280
+
Asp
GTC
[ENA]
¢þ
>WENV180275238
OBHT01000316
[OBHT] metagenome; hydrothermal vent
1925
1849
-
Asp
GTC
[ENA]
¢þ
>WENV180287667
OBIL01000115
[OBIL] metagenome; hydrothermal vent
1654
1730
+
Asp
GTC
[ENA]
¢þ
>WENV180316798
OBKJ01000020
[OBKJ] metagenome; hydrothermal vent
35523
35447
-
Asp
GTC
[ENA]
¢þ
>WENV180316803
OBKJ01000020
[OBKJ] metagenome; hydrothermal vent
35067
34991
-
Asp
GTC
[ENA]
¢þ
>W141083625
AUPZ01000014
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
40894
40818
-
Asp
GTC
[ENA]
¡û
>W141083627
AUPZ01000014
Campylobacterota
Sulfurimonas hongkongensis AST-10 [AUPZ]
40363
40287
-
Asp
GTC
[ENA]
¡û
>WENV181206193
OFAT01000162
[OFAT] metagenome; hydrothermal vent
405
329
-
Asp
GTC
[ENA]
¢þ
>WENV181206523
OFAW01000023
[OFAW] metagenome; hydrothermal vent
6887
6963
+
Asp
GTC
[ENA]
¢þ
>WENV181206528
OFAW01000023
[OFAW] metagenome; hydrothermal vent
7343
7419
+
Asp
GTC
[ENA]
¢þ
>WENV181207005
OFAY01000023
[OFAY] metagenome; hydrothermal vent
6884
6960
+
Asp
GTC
[ENA]
¢þ
>WENV181207010
OFAY01000023
[OFAY] metagenome; hydrothermal vent
7340
7416
+
Asp
GTC
[ENA]
¢þ
>WENV181207377
OFAZ01000023
[OFAZ] metagenome; hydrothermal vent
35520
35444
-
Asp
GTC
[ENA]
¢þ
>WENV181207382
OFAZ01000023
[OFAZ] metagenome; hydrothermal vent
35064
34988
-
Asp
GTC
[ENA]
¢þ
>WENV181207743
OFBA01000021
[OFBA] metagenome; hydrothermal vent
6884
6960
+
Asp
GTC
[ENA]
¢þ
>WENV181207748
OFBA01000021
[OFBA] metagenome; hydrothermal vent
7340
7416
+
Asp
GTC
[ENA]
¢þ
>WENV181208120
OFBB01000025
[OFBB] metagenome; hydrothermal vent
1673
1749
+
Asp
GTC
[ENA]
¢þ
>WENV181208125
OFBB01000025
[OFBB] metagenome; hydrothermal vent
2129
2205
+
Asp
GTC
[ENA]
¢þ
>WENV181208523
OFBC01000002
[OFBC] metagenome; hydrothermal vent
35521
35445
-
Asp
GTC
[ENA]
¢þ
>WENV181208528
OFBC01000002
[OFBC] metagenome; hydrothermal vent
35065
34989
-
Asp
GTC
[ENA]
¢þ
>WENV181211284
OFBK01000945
[OFBK] metagenome; hydrothermal vent
2100
2176
+
Asp
GTC
[ENA]
¢þ
>WENV181212014
OFBM01004411
[OFBM] metagenome; hydrothermal vent
833
909
+
Asp
GTC
[ENA]
¢þ
>WENV181212806
OFBU01000136
[OFBU] metagenome; hydrothermal vent
1654
1730
+
Asp
GTC
[ENA]
¢þ
>WENV181213286
OFBV01000126
[OFBV] metagenome; hydrothermal vent
1657
1733
+
Asp
GTC
[ENA]
¢þ
>WENV181213783
OFBW01000134
[OFBW] metagenome; hydrothermal vent
1654
1730
+
Asp
GTC
[ENA]
¢þ
>WENV181214361
OFBX01005123
[OFBX] metagenome; hydrothermal vent
299
223
-
Asp
GTC
[ENA]
¢þ
>WENV181214433
OFBY01000120
[OFBY] metagenome; hydrothermal vent
1657
1733
+
Asp
GTC
[ENA]
¢þ
>WENV181214934
OFBZ01000117
[OFBZ] metagenome; hydrothermal vent
8293
8217
-
Asp
GTC
[ENA]
¢þ
>WENV181215417
OFCA01000137
[OFCA] metagenome; hydrothermal vent
1654
1730
+
Asp
GTC
[ENA]
¢þ
>WENV181216034
OFCB01001747
[OFCB] metagenome; hydrothermal vent
1654
1730
+
Asp
GTC
[ENA]
¢þ
>WENV181223716
OFDD01000020
[OFDD] metagenome; hydrothermal vent
6884
6960
+
Asp
GTC
[ENA]
¢þ
>WENV181223721
OFDD01000020
[OFDD] metagenome; hydrothermal vent
7340
7416
+
Asp
GTC
[ENA]
¢þ
>WENV181224133
OFDE01000049
[OFDE] metagenome; hydrothermal vent
17465
17389
-
Asp
GTC
[ENA]
¢þ
>WENV181224339
OFDF01000020
[OFDF] metagenome; hydrothermal vent
6884
6960
+
Asp
GTC
[ENA]
¢þ
>WENV181224344
OFDF01000020
[OFDF] metagenome; hydrothermal vent
7340
7416
+
Asp
GTC
[ENA]
¢þ
>WENV181224554
OFDG01000002
[OFDG] metagenome; hydrothermal vent
64881
64957
+
Asp
GTC
[ENA]
¢þ
>WENV181224559
OFDG01000002
[OFDG] metagenome; hydrothermal vent
65337
65413
+
Asp
GTC
[ENA]
¢þ
>WENV181225283
OFDI01000023
[OFDI] metagenome; hydrothermal vent
6884
6960
+
Asp
GTC
[ENA]
¢þ
>WENV181225288
OFDI01000023
[OFDI] metagenome; hydrothermal vent
7340
7416
+
Asp
GTC
[ENA]
¢þ
>WENV181412397
OGCK01000103
[OGCK] hot springs metagenome; hot spring sediment
1027
951
-
Asp
GTC
[ENA]
¢þ
>C08010651
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
1849916
1849992
+
Asp
GTC
[Ensembl]
¡û
>C08010655
AP009179
Campylobacterota
Sulfurovum sp. NBC37-1 [AP009179]
1850527
1850603
+
Asp
GTC
[Ensembl]
¡û
>WENV183515167
OMKS01048894
[OMKS] sediment metagenome; hot spring sediment
2
78
+
Asp
GTC
[ENA]
¢þ
>WENV183515453
OMKS01064659
[OMKS] sediment metagenome; hot spring sediment
1130
1206
+
Asp
GTC
[ENA]
¢þ
>WENV170575528
FPHC01000036
[FPHC] hydrothermal vent metagenome genome assembly, contig: NODE_46.; water
7938
8014
+
Asp
GTC
[ENA]
¢þ
>WENV170575559
FPHD01000052
[FPHD] hydrothermal vent metagenome genome assembly, contig: NODE_13.; water
6889
6965
+
Asp
GTC
[ENA]
¢þ
>WENV170576088
FPIB01000002
[FPIB] hydrothermal vent metagenome genome assembly, contig: NODE_30.; water
57859
57935
+
Asp
GTC
[ENA]
¢þ
>WENV170577422
FRYL01000002
[FRYL] hydrothermal vent metagenome; water
3304
3228
-
Asp
GTC
[ENA]
¢þ
>WENV170692523
LGOV01011359
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
514
438
-
Asp
GTC
[ENA]
¢þ
>WENV170692568
LGOV01014333
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
6015
5939
-
Asp
GTC
[ENA]
¢þ
>WENV170692826
LGOV01034262
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1641
1565
-
Asp
GTC
[ENA]
¢þ
>C151079568
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
645231
645155
-
Asp
GTC
[Ensembl]
¡û
>C151079573
CP011308
Campylobacterota
Sulfurovum lithotrophicum ATCC BAA-797 [CP011308]
644605
644529
-
Asp
GTC
[Ensembl]
¡û
>C11116240
CP002452
Campylobacterota
Nitratifractor salsuginis DSM 16511 [CP002452]
631297
631221
-
Asp
GTC
[Ensembl]
¡û
>W121063611
AJLE01000006
Campylobacterota
Sulfurovum sp. AR [AJLE]
154146
154222
+
Asp
GTC
[ENA]
¡û
>W121063616
AJLE01000006
Campylobacterota
Sulfurovum sp. AR [AJLE]
154666
154742
+
Asp
GTC
[ENA]
¡û
>W1610760552
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
67926
67850
-
Asp
GTC
[ENA]
¡û
>W1610760556
LNKT01000001
Campylobacterota
Sulfurovum riftiae [LNKT]
67370
67294
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK