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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156061 (138 seq.)
>W131169496
ARET01000071
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [ARET]
118319
118237
-
Leu
TAG
[ENA]
¡û
>W131238119
AUUC01000002
Bacillota
Blautia producta ATCC 27340 = DSM 2950 [AUUC]
337032
337114
+
Leu
TAG
[ENA]
¡û
>W1712036114
NFHH01000006
Bacillota
Blautia sp. An81 [NFHH]
41373
41291
-
Leu
TAG
[ENA]
¡û
>W1712037451
NFIF01000009
Bacillota
Blautia sp. An46 [NFIF]
77298
77380
+
Leu
TAG
[ENA]
¡û
>WENV180123441
OASW01002311
[OASW] human gut metagenome; faeces
742
824
+
Leu
TAG
[ENA]
¡û
>WENV180123897
OASX01000491
[OASX] human gut metagenome; faeces
4677
4758
+
Leu
TAG
[ENA]
¡û
>WENV180125196
OASY01001219
[OASY] human gut metagenome; faeces
11924
11842
-
Leu
TAG
[ENA]
¡û
>WENV180126002
OASZ01000305
[OASZ] human gut metagenome; faeces
34400
34318
-
Leu
TAG
[ENA]
¡û
>WENV180139907
OATT01001647
[OATT] human gut metagenome; faeces
95
178
+
Leu
TAG
[ENA]
¡û
>WENV180141032
OATU01001800
[OATU] human gut metagenome; faeces
11808
11726
-
Leu
TAG
[ENA]
¡û
>WENV180148348
OAUK01000023
[OAUK] human gut metagenome; faeces
53802
53720
-
Leu
TAG
[ENA]
¡û
>WENV180162330
OAVG01001539
[OAVG] human gut metagenome; faeces
161
78
-
Leu
TAG
[ENA]
¡û
>WENV180182232
OAWO01002780
[OAWO] human gut metagenome; faeces
3566
3484
-
Leu
TAG
[ENA]
¡û
>WENV180307702
OBJQ01001366
[OBJQ] human gut metagenome; human gut
12810
12728
-
Leu
TAG
[ENA]
¡û
>WENV180446514
OBXC01000217
[OBXC] human gut metagenome; faeces
12551
12469
-
Leu
TAG
[ENA]
¡û
>WENV180454221
OBXM01010423
[OBXM] human gut metagenome; faeces
1318
1398
+
Leu
TAG
[ENA]
¡û
>WENV180482395
OBZG01000477
[OBZG] human gut metagenome; faeces
9616
9534
-
Leu
TAG
[ENA]
¡û
>WENV180506675
OCAS01002672
[OCAS] human gut metagenome; faeces
944
1026
+
Leu
TAG
[ENA]
¡û
>WENV181196183
OEQW01006579
[OEQW] metagenome; Caecal content
343
261
-
Leu
TAG
[ENA]
¡û
>WENV181198503
OERE01005455
[OERE] metagenome; Caecal content
151
69
-
Leu
TAG
[ENA]
¡û
>WENV181204011
OERX01016226
[OERX] metagenome; Caecal content
562
482
-
Leu
TAG
[ENA]
¡û
>WENV181204813
OERZ01028462
[OERZ] metagenome; Caecal content
166
249
+
Leu
TAG
[ENA]
¡û
>WENV181205543
OESB01004226
[OESB] metagenome; Caecal content
347
264
-
Leu
TAG
[ENA]
¡û
>WENV181263223
OFFZ01000546
[OFFZ] mouse gut metagenome; faeces
21768
21686
-
Leu
TAG
[ENA]
¡û
>WENV181265593
OFGB01000391
[OFGB] mouse gut metagenome; faeces
30672
30590
-
Leu
TAG
[ENA]
¡û
>WENV181289860
OFHA01002740
[OFHA] mouse gut metagenome; faeces
873
955
+
Leu
TAG
[ENA]
¡û
>WENV181290932
OFHB01000725
[OFHB] mouse gut metagenome; faeces
902
984
+
Leu
TAG
[ENA]
¡û
>WENV181337688
OFME01026905
[OFME] human gut metagenome; human gut
142
222
+
Leu
TAG
[ENA]
¡û
>WENV181338904
OFMF01044162
[OFMF] human gut metagenome; human gut
107
189
+
Leu
TAG
[ENA]
¡û
>WENV181343695
OFMJ01006918
[OFMJ] human gut metagenome; human gut
3749
3667
-
Leu
TAG
[ENA]
¡û
>WENV181344602
OFMK01001478
[OFMK] human gut metagenome; human gut
16818
16738
-
Leu
TAG
[ENA]
¡û
>WENV181395268
OFRZ01018695
[OFRZ] human gut metagenome; human gut
775
695
-
Leu
TAG
[ENA]
¡û
>WENV181420941
OGCN01009021
[OGCN] human gut metagenome; human gut
135
216
+
Leu
TAG
[ENA]
¡û
>WENV181600156
OGLD01000619
[OGLD] metagenome; Human gut stool
115
197
+
Leu
TAG
[ENA]
¡û
>WENV181703178
OGPJ01004042
[OGPJ] human gut metagenome; faeces
8068
7988
-
Leu
TAG
[ENA]
¡û
>WENV181752128
OGQQ01001611
[OGQQ] human gut metagenome; faeces
133
214
+
Leu
TAG
[ENA]
¡û
>WENV181786592
OGRN01003499
[OGRN] human gut metagenome; faeces
10955
10874
-
Leu
TAG
[ENA]
¡û
>WENV181816339
OGTL01002088
[OGTL] human gut metagenome; faeces
15849
15769
-
Leu
TAG
[ENA]
¡û
>WENV181834340
OGUR01000098
[OGUR] metagenome; Human gut stool
36861
36779
-
Leu
TAG
[ENA]
¡û
>WENV181887140
OGXL01001347
[OGXL] human gut metagenome; faeces
116
198
+
Leu
TAG
[ENA]
¡û
>WENV181890018
OGXN01003201
[OGXN] human gut metagenome; faeces
46
128
+
Leu
TAG
[ENA]
¡û
>WENV181896887
OGXS01005924
[OGXS] human gut metagenome; faeces
3558
3476
-
Leu
TAG
[ENA]
¡û
>WENV181917361
OGYG01010096
[OGYG] human gut metagenome; faeces
1868
1786
-
Leu
TAG
[ENA]
¡û
>WENV181988312
OHAN01009168
[OHAN] human gut metagenome; faeces
1405
1323
-
Leu
TAG
[ENA]
¡û
>WENV181995787
OHAT01009894
[OHAT] human gut metagenome; faeces
52
133
+
Leu
TAG
[ENA]
¡û
>WENV182227616
OHRG01001977
[OHRG] human gut metagenome; feces
107
189
+
Leu
TAG
[ENA]
¡û
>WENV182341563
OIAG01000577
[OIAG] human gut metagenome; feces
2295
2375
+
Leu
TAG
[ENA]
¡û
>WENV182409523
OIFJ01000001
[OIFJ] human gut metagenome; stool
423153
423071
-
Leu
TAG
[ENA]
¡û
>WENV182678532
OJNS01011261
[OJNS] human gut metagenome; human gut
2201
2120
-
Leu
TAG
[ENA]
¡û
>WENV182701251
OJOP01007175
[OJOP] human gut metagenome; human gut
2830
2749
-
Leu
TAG
[ENA]
¡û
>WENV182740090
OJQL01002778
[OJQL] human gut metagenome; stool sample
39
119
+
Leu
TAG
[ENA]
¡û
>WENV182803524
OJUL01002476
[OJUL] human gut metagenome; human gut
92
174
+
Leu
TAG
[ENA]
¡û
>WENV182907900
OKTF01001912
[OKTF] human gut metagenome; feces
107
189
+
Leu
TAG
[ENA]
¡û
>WENV182961458
OKWL01000007
[OKWL] human gut metagenome; stool
233091
233009
-
Leu
TAG
[ENA]
¡û
>WENV183018351
OLEY01006093
[OLEY] human gut metagenome; human gut
111
193
+
Leu
TAG
[ENA]
¡û
>WENV183101790
OLNH01001451
[OLNH] human gut metagenome; faeces
115
197
+
Leu
TAG
[ENA]
¡û
>WENV183105963
OLNL01001061
[OLNL] human gut metagenome; faeces
27392
27311
-
Leu
TAG
[ENA]
¡û
>WENV183128654
OLNZ01014423
[OLNZ] human gut metagenome; faeces
40
121
+
Leu
TAG
[ENA]
¡û
>WENV183134991
OLOD01010597
[OLOD] human gut metagenome; faeces
1990
1909
-
Leu
TAG
[ENA]
¡û
>WENV183140447
OLOI01042008
[OLOI] human gut metagenome; faeces
146
227
+
Leu
TAG
[ENA]
¡û
>WENV183144899
OLOL01014435
[OLOL] human gut metagenome; faeces
723
641
-
Leu
TAG
[ENA]
¡û
>WENV183166946
OLOY01005274
[OLOY] human gut metagenome; faeces
1494
1574
+
Leu
TAG
[ENA]
¡û
>WENV183168529
OLOZ01034906
[OLOZ] human gut metagenome; faeces
77
157
+
Leu
TAG
[ENA]
¡û
>WENV183174485
OLPE01001567
[OLPE] human gut metagenome; faeces
137
220
+
Leu
TAG
[ENA]
¡û
>WENV183187774
OLPO01072653
[OLPO] human gut metagenome; faeces
147
228
+
Leu
TAG
[ENA]
¡û
>WENV183196943
OLPU01007734
[OLPU] human gut metagenome; faeces
4903
4822
-
Leu
TAG
[ENA]
¡û
>WENV183198800
OLPV01005065
[OLPV] human gut metagenome; faeces
6871
6790
-
Leu
TAG
[ENA]
¡û
>WENV183203771
OLPY01003486
[OLPY] human gut metagenome; faeces
133
214
+
Leu
TAG
[ENA]
¡û
>WENV183205677
OLPZ01027362
[OLPZ] human gut metagenome; faeces
141
222
+
Leu
TAG
[ENA]
¡û
>WENV183218137
OLQI01018317
[OLQI] human gut metagenome; faeces
1164
1082
-
Leu
TAG
[ENA]
¡û
>WENV183234171
OLQV01014194
[OLQV] human gut metagenome; faeces
188
269
+
Leu
TAG
[ENA]
¡û
>WENV183241314
OLRA01092739
[OLRA] human gut metagenome; faeces
503
585
+
Leu
TAG
[ENA]
¡û
>WENV183249209
OLRG01001439
[OLRG] human gut metagenome; faeces
110
191
+
Leu
TAG
[ENA]
¡û
>WENV183254487
OLRJ01003674
[OLRJ] human gut metagenome; faeces
188
269
+
Leu
TAG
[ENA]
¡û
>WENV183255915
OLRK01002366
[OLRK] human gut metagenome; faeces
115
197
+
Leu
TAG
[ENA]
¡û
>WENV183266521
OLRT01003848
[OLRT] human gut metagenome; faeces
7955
7874
-
Leu
TAG
[ENA]
¡û
>WENV183272598
OLRX01000038
[OLRX] human gut metagenome; faeces
44455
44535
+
Leu
TAG
[ENA]
¡û
>WENV183280344
OLSB01003534
[OLSB] human gut metagenome; faeces
2257
2338
+
Leu
TAG
[ENA]
¡û
>WENV183290434
OLSH01000272
[OLSH] human gut metagenome; faeces
34400
34318
-
Leu
TAG
[ENA]
¡û
>WENV183517812
OMNP01015769
[OMNP] human gut metagenome; feces
833
914
+
Leu
TAG
[ENA]
¡û
>WENV183520430
OMNT01015448
[OMNT] human gut metagenome; faeces
195
276
+
Leu
TAG
[ENA]
¡û
>WENV183769974
PPYE01432501
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1296
1213
-
Leu
TAG
[ENA]
¡û
>WENV183792096
PPYF01450737
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1055
973
-
Leu
TAG
[ENA]
¡û
>WENV170637547
JFBN01329816
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1881
1801
-
Leu
TAG
[ENA]
¡û
>WENV170637825
JFBN01364372
[JFBN] chicken gut metagenome; ceca of Broiler chicken
1103
1023
-
Leu
TAG
[ENA]
¡û
>C191147551
CP035945
Bacillota
Blautia producta PMF1 [CP035945]
6330163
6330081
-
Leu
TAG
-
¡û
>W141732831
JNKJ01000017
Bacillota
Blautia schinkii DSM 10518 [JNKJ]
140255
140336
+
Leu
TAG
[ENA]
¡û
>W1910237437
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52408
52490
+
Leu
TAG
[ENA]
¡û
>W1910271000
FQLT01000003
Bacillota
Clostridium sp. Marseille-P3244 [FQLT]
915720
915801
+
Leu
TAG
[ENA]
¡û
>W1911180261
NQOF01000007
Bacillota
Blautia sp. KB1 [NQOF]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W1911532876
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1350937
1350855
-
Leu
TAG
[ENA]
¡û
>W1810252118
PQGB01000555
Bacillota
Blautia producta DSM 3507 [PQGB]
504
587
+
Leu
TAG
[ENA]
¡û
>W1810790985
QRHZ01000005
Bacillota
Blautia obeum AM22-9LB [QRHZ]
120562
120480
-
Leu
TAG
[ENA]
¡û
>W1810797226
QRMI01000005
Bacillota
[Ruminococcus] lactaris AM09-9 [QRMI]
39977
40057
+
Leu
TAG
[ENA]
¡û
>W1810800522
QROS01000006
Bacillota
Blautia obeum AF37-6AC [QROS]
162233
162315
+
Leu
TAG
[ENA]
¡û
>W1810821443
QSFL01000005
Bacillota
Blautia obeum AM43-41 [QSFL]
85357
85276
-
Leu
TAG
[ENA]
¡û
>W1810822578
QSGG01000007
Bacillota
Blautia obeum AM41-5 [QSGG]
53864
53782
-
Leu
TAG
[ENA]
¡û
>W1810826478
QSIZ01000001
Bacillota
Blautia obeum AM32-10AC [QSIZ]
135295
135214
-
Leu
TAG
[ENA]
¡û
>W1810828206
QSKF01000005
Bacillota
Blautia obeum AM28-23 [QSKF]
161249
161329
+
Leu
TAG
[ENA]
¡û
>W1810834494
QSQN01000005
Bacillota
[Ruminococcus] lactaris TF11-7 [QSQN]
52481
52561
+
Leu
TAG
[ENA]
¡û
>W1810839690
QSUB01000003
Bacillota
Blautia obeum OM06-11AA [QSUB]
174420
174502
+
Leu
TAG
[ENA]
¡û
>W1810873751
QUER01000004
Bacillota
Blautia sp. OF01-4LB [QUER]
33264
33181
-
Leu
TAG
[ENA]
¡û
>W1810877515
QUHN01000003
Bacillota
Blautia sp. AF13-16 [QUHN]
283280
283363
+
Leu
TAG
[ENA]
¡û
>W2010210560
CABHIG010000006
Bacillota
Erysipelatoclostridium ramosum 4928STDY7387865 [CABHIG]
291396
291477
+
Leu
TAG
[ENA]
¡û
>W2010249496
CABIXO020000033
Bacillota
Lachnospiraceae bacterium [CABIXO]
16105
16023
-
Leu
TAG
[ENA]
¡û
>W2010253626
CABJAF020000005
Bacillota
Blautia producta [CABJAF]
93353
93271
-
Leu
TAG
[ENA]
¡û
>W2010260854
CABJFK020000005
Bacillota
Blautia obeum [CABJFK]
161249
161329
+
Leu
TAG
[ENA]
¡û
>W2010276700
CABLBP020000001
Bacillota
Blautia producta [CABLBP]
118319
118237
-
Leu
TAG
[ENA]
¡û
>W2010285085
CABMKU010000007
Bacillota
Blautia marasmi [CABMKU]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W2010386646
FPLC01000010
Bacillota
Blautia sp. Marseille-P3201T [FPLC]
52408
52490
+
Leu
TAG
[ENA]
¡û
>W2010485662
JAAITA010000003
Bacillota
Blautia hansenii MSK.15.26 [JAAITA]
190219
190301
+
Leu
TAG
[ENA]
¡û
>W2010486743
JAAITU010000053
Bacillota
Blautia glucerasea MSK.21.93 [JAAITU]
7871
7953
+
Leu
TAG
[ENA]
¡û
>W2011036193
NQOF01000007
Bacillota
Blautia sp. KB1 [NQOF]
128543
128461
-
Leu
TAG
[ENA]
¡û
>W2011165563
OIWX01000001
Bacillota
Blautia marasmi Marseille-P2377 [OIWX]
1350937
1350855
-
Leu
TAG
[ENA]
¡û
>W2110101249
CAJFMH010000014
Bacillota
Blautia sp. An81 [CAJFMH]
163
245
+
Leu
TAG
[ENA]
¡û
>W2110102524
CAJFRM010000064
Bacillota
Lachnoclostridium sp. An76 [CAJFRM]
8117
8037
-
Leu
TAG
[ENA]
¡û
>W2110123096
CAJTAN010000011
Bacillota
Blautia coccoides [CAJTAN]
150
233
+
Leu
TAG
[ENA]
¡û
>W2110128991
CAJTHK010000008
Bacillota
Blautia coccoides [CAJTHK]
39997
40080
+
Leu
TAG
[ENA]
¡û
>W2110244950
JACOOU010000001
Bacillota
Blautia sp. NSJ-34 [JACOOU]
246124
246041
-
Leu
TAG
[ENA]
¡û
>W2110245565
JACOPF010000001
Bacillota
Mediterraneibacter sp. NSJ-55 [JACOPF]
1523844
1523762
-
Leu
TAG
[ENA]
¡û
>W2110246549
JACOQE010000004
Bacillota
Blautia intestinalis 27-44 [JACOQE]
177096
177177
+
Leu
TAG
[ENA]
¡û
>W2110340418
JADMRC010000005
Bacillota
Blautia obeum D31t1_170403_H11 [JADMRC]
92606
92686
+
Leu
TAG
[ENA]
¡û
>C211050562
CP039126
Bacillota
Blautia producta DSM 2950 [CP039126]
1007815
1007897
+
Leu
TAG
-
¡û
>W2110706511
JAIVMH010000001
Bacillota
Blautia sp. RD014234 [JAIVMH]
2358793
2358711
-
Leu
TAG
[ENA]
¡û
>W2110709591
JAIXOC010000002
Bacillota
Blautia sp. RD014232 [JAIXOC]
1028965
1029048
+
Leu
TAG
[ENA]
¡û
>W2110720899
JAJBOG010000003
Bacillota
Blautia hansenii MSK.15.43 [JAJBOG]
55391
55309
-
Leu
TAG
[ENA]
¡û
>W2110728003
JAJCKP010000062
Bacillota
Blautia marasmi DFI.6.18 [JAJCKP]
25345
25263
-
Leu
TAG
[ENA]
¡û
>W2110734349
JAJCRV010000007
Bacillota
Blautia marasmi SL.2.02 [JAJCRV]
81961
82042
+
Leu
TAG
[ENA]
¡û
>C231187924
CP084061
Bacillota
Blautia sp. NBRC 113351 [CP084061]
5230261
5230344
+
Leu
TAG
-
¡û
>C231347123
CP094680
Bacillota
Clostridia bacterium UC5.1-1D4 VE303-05 [CP094680]
5288912
5288994
+
Leu
TAG
-
¡û
>C241129847
CP048626
Bacillota
Blautia producta ATCC 27340 = DSM 2950 JCM 1471 [CP048626]
2145453
2145371
-
Leu
TAG
-
¡û
>C241154992
CP053228
Bacillota
Blautia pseudococcoides SCSK [CP053228]
3201024
3200941
-
Leu
TAG
-
¡û
>C241327039
CP136422
Bacillota
Blautia coccoides DSM 935 [CP136422]
5152028
5151946
-
Leu
TAG
-
¡û
>W1511303251
JPJF01000064
Bacillota
Blautia producta ER3 [JPJF]
139
221
+
Leu
TAG
[ENA]
¡û
>C161087336
CP015405
Bacillota
Blautia pseudococcoides YL58 [CP015405]
5030663
5030746
+
Leu
TAG
[Ensembl]
¡û
>C161103960
FP929054
Bacillota
Blautia obeum A2-162 [FP929054]
3385357
3385274
-
Leu
TAG
-
¡û
>W1610058250
BBZR01000029
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
32937
32854
-
Leu
TAG
[ENA]
¡û
>W1710055009
BBZR01000029
Bacillota
Clostridia bacterium UC5.1-1D4 [BBZR]
32937
32854
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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