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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156339 (57 seq.)
>W1711115560
LUAH01000016
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
33287
33210
-
Val
TAC
[ENA]
¡û
>W1711506299
MKWH01000021
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
227824
227747
-
Val
TAC
[ENA]
¡û
>W1711506301
MKWH01000021
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
227650
227573
-
Val
TAC
[ENA]
¡û
>C171089522
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
6250881
6250804
-
Val
TAC
-
¡û
>C171118465
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5953950
5953873
-
Val
TAC
-
¡û
>C171118467
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5953775
5953698
-
Val
TAC
-
¡û
>WENV183726748
PJTO01000120
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
70321
70244
-
Val
TAC
[ENA]
¢þ
>WENV183726750
PJTO01000120
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183727676
PJTP01000082
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
70321
70244
-
Val
TAC
[ENA]
¢þ
>WENV183727678
PJTP01000082
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183728624
PJTQ01000197
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
70146
70071
-
Val
TAC
[ENA]
¢þ
>WENV183728779
PJTQ01000430
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
23542
23619
+
Val
TAC
[ENA]
¢þ
>WENV183728781
PJTQ01000430
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
23717
23792
+
Val
TAC
[ENA]
¢þ
>WENV183730224
PJTR01005863
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
156
79
-
Val
TAC
[ENA]
¢þ
>WENV183730596
PJTS01000169
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13473
13550
+
Val
TAC
[ENA]
¢þ
>WENV183730598
PJTS01000169
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
13647
13722
+
Val
TAC
[ENA]
¢þ
>WENV183732306
PJTX01000006
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
165565
165488
-
Val
TAC
[ENA]
¢þ
>WENV183732308
PJTX01000006
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
165391
165316
-
Val
TAC
[ENA]
¢þ
>WENV183735116
PJUA01001100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
92
169
+
Val
TAC
[ENA]
¢þ
>WENV183735118
PJUA01001100
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
267
342
+
Val
TAC
[ENA]
¢þ
>WENV183735236
PJUA01004809
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183735651
PJUB01000321
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23542
23619
+
Val
TAC
[ENA]
¢þ
>WENV183735653
PJUB01000321
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
23717
23792
+
Val
TAC
[ENA]
¢þ
>WENV183735719
PJUB01000863
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
6535
6460
-
Val
TAC
[ENA]
¢þ
>WENV183735815
PJUB01003704
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
2121
2046
-
Val
TAC
[ENA]
¢þ
>WENV183737031
PJUD01000259
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183737056
PJUD01000316
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30548
30625
+
Val
TAC
[ENA]
¢þ
>WENV183737058
PJUD01000316
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
30722
30797
+
Val
TAC
[ENA]
¢þ
>WENV183737311
PJUD01003422
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183737312
PJUD01003422
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4596
4671
+
Val
TAC
[ENA]
¢þ
>WENV183738898
PJUE01000379
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183738901
PJUE01000393
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30548
30625
+
Val
TAC
[ENA]
¢þ
>WENV183738903
PJUE01000393
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
30722
30797
+
Val
TAC
[ENA]
¢þ
>WENV183739156
PJUE01002398
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
15
90
+
Val
TAC
[ENA]
¢þ
>WENV183739157
PJUE01002398
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4596
4671
+
Val
TAC
[ENA]
¢þ
>WENV183740992
PJUF01024944
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
949
874
-
Val
TAC
[ENA]
¢þ
>WENV183741404
PJUG01000005
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
371485
371408
-
Val
TAC
[ENA]
¢þ
>WENV183741406
PJUG01000005
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
371311
371236
-
Val
TAC
[ENA]
¢þ
>WENV183741919
PJUH01000008
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183741921
PJUH01000008
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183742552
PJUI01000013
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
265723
265800
+
Val
TAC
[ENA]
¢þ
>WENV183742554
PJUI01000013
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
265897
265972
+
Val
TAC
[ENA]
¢þ
>WENV183743014
PJUJ01000008
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183743016
PJUJ01000008
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183743824
PJUK01000007
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108577
108654
+
Val
TAC
[ENA]
¢þ
>WENV183743826
PJUK01000007
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108751
108826
+
Val
TAC
[ENA]
¢þ
>WENV183745364
PJUL01038126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
48
125
+
Val
TAC
[ENA]
¢þ
>WENV183745366
PJUL01038126
[PJUL] feces metagenome; Chicken feces enriched on filter paper
222
297
+
Val
TAC
[ENA]
¢þ
>C191222285
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2151620
2151697
+
Val
TAC
-
¡û
>C191222287
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2151794
2151869
+
Val
TAC
-
¡û
>W1910664385
MCAQ01000025
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
267424
267347
-
Val
TAC
[ENA]
¡û
>W1910664387
MCAQ01000025
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
267249
267174
-
Val
TAC
[ENA]
¡û
>W1810564221
QEAS01000020
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
69166
69243
+
Val
TAC
[ENA]
¡û
>W1810564222
QEAS01000020
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
69297
69374
+
Val
TAC
[ENA]
¡û
>W1511590261
LBGU01000028
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13735
13658
-
Val
TAC
[ENA]
¡û
>W1511590263
LBGU01000028
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
13561
13484
-
Val
TAC
[ENA]
¡û
>W1710538674
FNUT01000001
Bacteroidota
Sphingobacterium lactis [FNUT]
365615
365540
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK