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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156343 (29 seq.)
>W1710859011
LMBR01000229
Chlorobiota
Chlorobium limicola [LMBR]
122
45
-
Asp
GTC
[ENA]
¡û
>W1711626062
MPJE01000008
Chlorobiota
Chlorobium sp. KB01 [MPJE]
25069
24994
-
Asp
GTC
[ENA]
¡û
>C171049460
CP016432
Chlorobiota
Prosthecochloris sp. CIB 2401 [CP016432]
1997416
1997491
+
Asp
GTC
-
¡û
>C171114012
CP020873
Chlorobiota
Prosthecochloris sp. HL-130-GSB [CP020873]
1996747
1996824
+
Asp
GTC
-
¡û
>C005325
CP000108
Chlorobiota
Chlorobium chlorochromatii [CP000108]
353031
352954
-
Asp
GTC
[Ensembl]
¡û
>C006598
CP000492
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [CP000492]
2417293
2417367
+
Asp
GTC
[Ensembl]
¡û
>w018025
AASE01000001
Chlorobiota
Chlorobium ferrooxidans DSM 13031 [AASE]
275548
275627
+
Asp
GTC
[ENA]
¡û
>w007140
AAIJ01000001
Chlorobiota
Prosthecochloris aestuarii DSM 271 [AAIJ]
86012
86089
+
Asp
GTC
[ENA]
¡û
>w006948
AAIC01000004
Chlorobiota
Chlorobium phaeobacteroides BS1 [AAIC]
24609
24686
+
Asp
GTC
[ENA]
¡û
>w006110
AAHJ01000008
Chlorobiota
Chlorobium limicola DSM 245 [AAHJ]
29236
29313
+
Asp
GTC
[ENA]
¡û
>WENV181232300
OFEN01000003
[OFEN] coral metagenome; NA
36513
36438
-
Asp
GTC
[ENA]
¢þ
>WENV181232308
OFEN01000012
[OFEN] coral metagenome; NA
17239
17314
+
Asp
GTC
[ENA]
¢þ
>WENV181233203
OFES01000001
[OFES] coral metagenome; NA
207251
207326
+
Asp
GTC
[ENA]
¢þ
>WENV181233222
OFES01000009
[OFES] coral metagenome; NA
15187
15262
+
Asp
GTC
[ENA]
¢þ
>WENV181303860
OFHR01000019
[OFHR] coral metagenome; NA
79
4
-
Asp
GTC
[ENA]
¢þ
>C08003506
CP001097
Chlorobiota
Chlorobium limicola DSM 245 [CP001097]
2253037
2253114
+
Asp
GTC
[Ensembl]
¡û
>C08003650
CP001101
Chlorobiota
Chlorobium phaeobacteroides [CP001101]
2233294
2233371
+
Asp
GTC
[Ensembl]
¡û
>C08003620
CP001099
Chlorobiota
Chlorobaculum parvum NCIB 8327 [CP001099]
395523
395448
-
Asp
GTC
[Ensembl]
¡û
>C08003788
CP001100
Chlorobiota
Chloroherpeton thalassium ATCC 35110 [CP001100]
236301
236378
+
Asp
GTC
[Ensembl]
¡û
>C08007171
CP001108
Chlorobiota
Prosthecochloris aestuarii DSM 271 [CP001108]
2045401
2045476
+
Asp
GTC
[Ensembl]
¡û
>WENV183513694
OMKS01007133
[OMKS] sediment metagenome; hot spring sediment
5298
5223
-
Asp
GTC
[ENA]
¢þ
>WENV170624742
FUWD013186004
[FUWD] metagenome; unknown
7756
7833
+
Asp
GTC
[ENA]
¢þ
>WENV170633024
FUWD013390157
[FUWD] metagenome; unknown
7756
7833
+
Asp
GTC
[ENA]
¢þ
>C181068786
CP022571
Chlorobiota
Prosthecochloris sp. GSB1 TY Vent [CP022571]
2095072
2095147
+
Asp
GTC
-
¡û
>W09102660
AAIB01000011
Chlorobiota
Chlorobium phaeobacteroides DSM 266 [AAIB]
54935
55010
+
Asp
GTC
[ENA]
¡û
>W1810062205
PDNX01000007
Chlorobiota
Prosthecochloris sp. ZM [PDNX]
404291
404216
-
Asp
GTC
[ENA]
¡û
>W1810062221
PDNY01000008
Chlorobiota
Prosthecochloris sp. ZM_2 [PDNY]
27847
27922
+
Asp
GTC
[ENA]
¡û
>W1810062254
PDNZ01000002
Chlorobiota
Prosthecochloris marina V1 [PDNZ]
106676
106751
+
Asp
GTC
[ENA]
¡û
>W1610721357
LMBR01000229
Chlorobiota
Chlorobium limicola [LMBR]
122
45
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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