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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156756 (34 seq.)
>W1711097975
LTJE01000023
Bacteroidota
Weeksella sp. HMSC059D05 [LTJE]
78543
78624
+
Leu
CAA
[ENA]
¡û
>W131181247
ARNT01000026
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [ARNT]
268139
268222
+
Leu
CAA
[ENA]
¡û
>WENV181195987
OEQV01009424
[OEQV] metagenome; water of meat washing
498
579
+
Leu
CAA
[ENA]
¡û
>WENV181201576
OERO01006084
[OERO] metagenome; water of meat washing
112
31
-
Leu
CAA
[ENA]
¡û
>W141266269
CCMH01000052
Bacteroidota
Weeksella massiliensis FF8 [CCMH]
49351
49432
+
Leu
CAA
[ENA]
¡û
>WENV183726996
PJTO01001486
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
4110
4029
-
Leu
CAA
[ENA]
¡û
>WENV183727560
PJTP01000018
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
189211
189130
-
Leu
CAA
[ENA]
¡û
>C191210748
LR134404
Bacteroidota
Weeksella virosa NCTC11634 [LR134404]
1683007
1682926
-
Leu
CAA
-
¡û
>W2010102717
BJXC01000028
Bacteroidota
Empedobacter brevis NBRC 14943 = ATCC 43319 [BJXC]
44500
44581
+
Leu
CAA
[ENA]
¡û
>W2010599621
JABFOQ010000015
Bacteroidota
Empedobacter stercoris ES202 [JABFOQ]
13877
13958
+
Leu
CAA
[ENA]
¡û
>W2010750682
JACLFP010000001
Bacteroidota
Empedobacter falsenii EF1 [JACLFP]
3437672
3437591
-
Leu
CAA
[ENA]
¡û
>W2011423683
RHPN01000046
Bacteroidota
Empedobacter falsenii WF_350 [RHPN]
17194
17275
+
Leu
CAA
[ENA]
¡û
>W2011423740
RHPO01000047
Bacteroidota
Empedobacter falsenii WF_348 [RHPO]
17194
17275
+
Leu
CAA
[ENA]
¡û
>W2011679917
SRPE01000006
Bacteroidota
Empedobacter sp. MRS2 [SRPE]
290517
290598
+
Leu
CAA
[ENA]
¡û
>W2011821605
UFXS01000002
Bacteroidota
Empedobacter falsenii NCTC13456 [UFXS]
42596
42677
+
Leu
CAA
[ENA]
¡û
>W2011845951
UHIU01000004
Bacteroidota
Weeksella virosa NCTC11635 [UHIU]
1386068
1386149
+
Leu
CAA
[ENA]
¡û
>W2011955426
UYIY01000013
Bacteroidota
Empedobacter brevis NCTC13469 [UYIY]
271775
271856
+
Leu
CAA
[ENA]
¡û
>W2110022651
BMFL01000004
Bacteroidota
Chishuiella changwenlii CGMCC 1.12707 [BMFL]
88693
88774
+
Leu
CAA
[ENA]
¡û
>W2110140964
JAAGKM010000009
Bacteroidota
Empedobacter falsenii Q1655 [JAAGKM]
19378
19297
-
Leu
CAA
[ENA]
¡û
>W2110285656
JACXZB010000005
Bacteroidota
Empedobacter stercoris ES180 [JACXZB]
66264
66183
-
Leu
CAA
[ENA]
¡û
>W2110285714
JACXZC010000003
Bacteroidota
Empedobacter stercoris ES215 [JACXZC]
113341
113422
+
Leu
CAA
[ENA]
¡û
>W2110286623
JACXZR010000006
Bacteroidota
Empedobacter stercoris ES182 [JACXZR]
59004
58923
-
Leu
CAA
[ENA]
¡û
>W2110683378
JAIKTW010000060
Bacteroidota
Empedobacter falsenii B4b2P8686 [JAIKTW]
10708
10627
-
Leu
CAA
[ENA]
¡û
>C201090686
CP040908
Bacteroidota
Empedobacter falsenii 1681-1 [CP040908]
3437672
3437591
-
Leu
CAA
-
¡û
>C201136117
CP043634
Bacteroidota
Empedobacter brevis SE1-3 [CP043634]
733386
733305
-
Leu
CAA
-
¡û
>C211094285
CP053698
Bacteroidota
Empedobacter stercoris ES183 [CP053698]
2265501
2265420
-
Leu
CAA
-
¡û
>C231486729
CP104209
Bacteroidota
Empedobacter stercoris SCVM0123 [CP104209]
2228322
2228403
+
Leu
CAA
-
¡û
>C241016885
CP013210
Bacteroidota
Empedobacter brevis BCLYD2 [CP013210]
345709
345628
-
Leu
CAA
-
¡û
>W1511391150
JSYQ01000008
Bacteroidota
Empedobacter falsenii 282 [JSYQ]
9061
8978
-
Leu
CAA
[ENA]
¡û
>C11123796
CP002455
Bacteroidota
Weeksella virosa DSM 16922 [CP002455]
1425389
1425470
+
Leu
CAA
[Ensembl]
¡û
>W1610503151
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
649293
649374
+
Leu
CAA
[ENA]
¡û
>W1710496385
FLMR01000009
Bacteroidota
Vaginella massiliensis Marseille-P2517 [FLMR]
649293
649374
+
Leu
CAA
[ENA]
¡û
>W1710570241
FOUZ01000024
Bacteroidota
Algoriella xinjiangensis [FOUZ]
9769
9850
+
Leu
CAA
[ENA]
¡û
>W1710590804
FRBH01000008
Bacteroidota
Chishuiella changwenlii [FRBH]
103799
103716
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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