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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156956 (57 seq.)
>W1711283061
LZOF01000019
Spirochaetota
Brachyspira hampsonii [LZOF]
71095
71020
-
Asp
GTC
[ENA]
¡û
>W1711283106
LZOG01000146
Spirochaetota
Brachyspira hampsonii [LZOG]
6322
6247
-
Asp
GTC
[ENA]
¡û
>W1711307479
MAOX01000007
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
105921
105846
-
Asp
GTC
[ENA]
¡û
>W1711307502
MAOY01000001
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
329106
329031
-
Asp
GTC
[ENA]
¡û
>W1711351550
MDCO01000001
Spirochaetota
Brachyspira hampsonii [MDCO]
288730
288655
-
Asp
GTC
[ENA]
¡û
>W1711507038
MKXF01000004
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
18000
18075
+
Asp
GTC
[ENA]
¡û
>W131093666
AOMM01000547
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
624
549
-
Asp
GTC
[ENA]
¡û
>W131182386
ARQI01000106
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
31764
31689
-
Asp
GTC
[ENA]
¡û
>W131184501
ARSY01000041
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
19019
18944
-
Asp
GTC
[ENA]
¡û
>WENV180116952
OARB01000328
[OARB] human gut metagenome; ENVO:feces
1887
1811
-
Asp
GTC
[ENA]
¢þ
>WENV180117053
OARC01008187
[OARC] human gut metagenome; ENVO:feces
143
219
+
Asp
GTC
[ENA]
¢þ
>WENV180117716
OARM01000017
[OARM] human gut metagenome; ENVO:feces
138180
138104
-
Asp
GTC
[ENA]
¢þ
>W141037623
ALNZ01000006
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
6301
6226
-
Asp
GTC
[ENA]
¡û
>WENV180404975
OBSA01116414
[OBSA] human gut metagenome; ENVO:feces
119
43
-
Asp
GTC
[ENA]
¢þ
>WENV181666253
OGOJ01031727
[OGOJ] human gut metagenome; faeces
4
80
+
Asp
GTC
[ENA]
¢þ
>WENV181705637
OGPK01016324
[OGPK] human gut metagenome; faeces
534
610
+
Asp
GTC
[ENA]
¢þ
>W141275738
JADF01000018
Spirochaetota
Brachyspira alvinipulli ATCC 51933 [JADF]
136321
136246
-
Asp
GTC
[ENA]
¡û
>WENV182958619
OKWH01030751
[OKWH] human gut metagenome; human gut
223
299
+
Asp
GTC
[ENA]
¢þ
>WENV183384541
OLYN01006175
[OLYN] human gut metagenome; feces
1543
1467
-
Asp
GTC
[ENA]
¢þ
>WENV183424049
OMBG01019174
[OMBG] human gut metagenome; feces
301
377
+
Asp
GTC
[ENA]
¢þ
>WENV183446981
OMCS01000527
[OMCS] human gut metagenome; feces
18624
18700
+
Asp
GTC
[ENA]
¢þ
>WENV183652075
OQVU01014345
[OQVU] human gut metagenome; human gut
2123
2199
+
Asp
GTC
[ENA]
¢þ
>C181038069
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2074032
2074107
+
Asp
GTC
-
¡û
>C191016983
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1969562
1969637
+
Asp
GTC
-
¡û
>W09108421
ABTG01000002
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
808188
808113
-
Asp
GTC
[ENA]
¡û
>W1910000030
AFQM01000046
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
36880
36804
-
Asp
GTC
[ENA]
¡û
>C09102340
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2313210
2313285
+
Asp
GTC
[Ensembl]
¡û
>W1910569154
JJMJ01000266
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
5181
5256
+
Asp
GTC
[ENA]
¡û
>W1910569196
JJMV01000006
Spirochaetota
Brachyspira hampsonii bv. II KL-180 [JJMV]
367536
367611
+
Asp
GTC
[ENA]
¡û
>W1910574886
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
2552470
2552545
+
Asp
GTC
[ENA]
¡û
>C10101958
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1469665
1469590
-
Asp
GTC
[Ensembl]
¡û
>C10101992
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
1101151
1101075
-
Asp
GTC
[Ensembl]
¡û
>C11103120
CP002874
Spirochaetota
Brachyspira intermedia PWS/A [CP002874]
3038959
3038884
-
Asp
GTC
[Ensembl]
¡û
>W1510641492
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
86555
86630
+
Asp
GTC
[ENA]
¡û
>W1511506943
JXNA01000044
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
16510
16585
+
Asp
GTC
[ENA]
¡û
>W1511506963
JXNB01000015
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
147026
147101
+
Asp
GTC
[ENA]
¡û
>W1511507023
JXNC01000125
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
15814
15889
+
Asp
GTC
[ENA]
¡û
>W1511507055
JXND01000094
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
72219
72144
-
Asp
GTC
[ENA]
¡û
>W1511507081
JXNE01000074
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
69861
69786
-
Asp
GTC
[ENA]
¡û
>W1511507110
JXNF01000063
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
200701
200626
-
Asp
GTC
[ENA]
¡û
>W1511507151
JXNG01000108
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
17950
17875
-
Asp
GTC
[ENA]
¡û
>W1511507182
JXNH01000085
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
218893
218968
+
Asp
GTC
[ENA]
¡û
>W1511507206
JXNI01000073
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
19924
19849
-
Asp
GTC
[ENA]
¡û
>W1511507243
JXNJ01000034
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
18876
18801
-
Asp
GTC
[ENA]
¡û
>W1511507265
JXNK01000053
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
20820
20745
-
Asp
GTC
[ENA]
¡û
>W1511507290
JXNL01000035
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
16510
16585
+
Asp
GTC
[ENA]
¡û
>W1511507329
JXNM01000094
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
40983
41058
+
Asp
GTC
[ENA]
¡û
>W1511507372
JXNN01000063
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
40307
40382
+
Asp
GTC
[ENA]
¡û
>W1511507400
JXNO01000085
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
34509
34584
+
Asp
GTC
[ENA]
¡û
>W1511507433
JXNP01000074
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
296649
296574
-
Asp
GTC
[ENA]
¡û
>W1511507465
JXNQ01000054
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
10638
10563
-
Asp
GTC
[ENA]
¡û
>W1511507488
JXNR01000059
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
171333
171408
+
Asp
GTC
[ENA]
¡û
>W1511507518
JXNS01000057
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
1843
1918
+
Asp
GTC
[ENA]
¡û
>C161092144
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1403699
1403624
-
Asp
GTC
[Ensembl]
¡û
>C131001488
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2116221
2116297
+
Asp
GTC
[Ensembl]
¡û
>C131003812
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
354755
354831
+
Asp
GTC
[Ensembl]
¡û
>C131019664
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2560604
2560528
-
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK