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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157308 (38 seq.)
>A171000281
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785718
785642
-
Asp
GTC
-
¡û
>A171000283
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
785519
785444
-
Asp
GTC
-
¡û
>A171001544
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1633852
1633927
+
Asp
GTC
-
¡û
>A171001546
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1634225
1634300
+
Asp
GTC
-
¡û
>A171002350
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594180
594104
-
Asp
GTC
-
¡û
>A171002352
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
593815
593739
-
Asp
GTC
-
¡û
>WENV180274904
OBHO01004241
[OBHO] metagenome; water
192
268
+
Asp
GTC
[ENA]
¢þ
>WENV180287212
OBIK01002226
[OBIK] hydrothermal vent metagenome; sea water
167
243
+
Asp
GTC
[ENA]
¢þ
>WENV180288231
OBIL01093711
[OBIL] metagenome; hydrothermal vent
100
24
-
Asp
GTC
[ENA]
¢þ
>WENV180316919
OBKJ01001773
[OBKJ] metagenome; hydrothermal vent
646
722
+
Asp
GTC
[ENA]
¢þ
>WENV180317145
OBKJ01030188
[OBKJ] metagenome; hydrothermal vent
91
167
+
Asp
GTC
[ENA]
¢þ
>WENV180317157
OBKJ01033479
[OBKJ] metagenome; hydrothermal vent
91
167
+
Asp
GTC
[ENA]
¢þ
>WENV180317245
OBKJ01078435
[OBKJ] metagenome; hydrothermal vent
183
107
-
Asp
GTC
[ENA]
¢þ
>WENV180317386
OBKJ01138786
[OBKJ] metagenome; hydrothermal vent
98
22
-
Asp
GTC
[ENA]
¢þ
>WENV180317399
OBKJ01142392
[OBKJ] metagenome; hydrothermal vent
98
22
-
Asp
GTC
[ENA]
¢þ
>WENV180332542
OBLD01038379
[OBLD] metagenome; water
98
22
-
Asp
GTC
[ENA]
¢þ
>WENV180332557
OBLD01044523
[OBLD] metagenome; water
222
298
+
Asp
GTC
[ENA]
¢þ
>WENV180581531
OCMK01002959
[OCMK] metagenome; diffuse fluid
543
619
+
Asp
GTC
[ENA]
¢þ
>WENV180582046
OCML01070068
[OCML] metagenome; diffuse fluid
140
64
-
Asp
GTC
[ENA]
¢þ
>WENV180582388
OCMO01077373
[OCMO] metagenome; diffuse fluid
93
17
-
Asp
GTC
[ENA]
¢þ
>WENV181206583
OFAW01000289
[OFAW] metagenome; hydrothermal vent
519
595
+
Asp
GTC
[ENA]
¢þ
>WENV181207169
OFAY01002566
[OFAY] metagenome; hydrothermal vent
1270
1194
-
Asp
GTC
[ENA]
¢þ
>WENV181208343
OFBB01004576
[OFBB] metagenome; hydrothermal vent
1214
1138
-
Asp
GTC
[ENA]
¢þ
>WENV181208652
OFBC01000885
[OFBC] metagenome; hydrothermal vent
3144
3068
-
Asp
GTC
[ENA]
¢þ
>WENV181224148
OFDE01000088
[OFDE] metagenome; hydrothermal vent
8024
8100
+
Asp
GTC
[ENA]
¢þ
>At1093
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072456
1072530
+
Asp
GTC
[Ensembl]
¡û
>At1095
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1072657
1072731
+
Asp
GTC
[Ensembl]
¡û
>At1167
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1127478
1127552
+
Asp
GTC
[Ensembl]
¡û
>At1169
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1127699
1127773
+
Asp
GTC
[Ensembl]
¡û
>W1610000375
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69394
69469
+
Asp
GTC
[ENA]
¡û
>W1610000377
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
69615
69690
+
Asp
GTC
[ENA]
¡û
>W1610000474
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700483
700406
-
Asp
GTC
[ENA]
¡û
>W1610000476
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
700282
700207
-
Asp
GTC
[ENA]
¡û
>W1610000575
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1631068
1630991
-
Asp
GTC
[ENA]
¡û
>W1610000577
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1630869
1630794
-
Asp
GTC
[ENA]
¡û
>W1610002132
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
34976
34900
-
Asp
GTC
[ENA]
¡û
>W1610002134
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
34611
34535
-
Asp
GTC
[ENA]
¡û
>W1610018886
AQXV01000038
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
17
93
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK