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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158081 (79 seq.)
>W1710915861
LNUO01000190
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3717
3641
-
Ile
GAT
[ENA]
¡û
>W1711682931
MRYA01000014
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
1740
1816
+
Ile
GAT
[ENA]
¡û
>C171131062
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
754731
754807
+
Ile
GAT
-
¡û
>C171131080
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
3211554
3211478
-
Ile
GAT
-
¡û
>C171131082
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
3205114
3205038
-
Ile
GAT
-
¡û
>C171131084
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
3020719
3020643
-
Ile
GAT
-
¡û
>C015804
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
662172
662248
+
Ile
GAT
[Ensembl]
¡û
>C015822
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2589638
2589562
-
Ile
GAT
[Ensembl]
¡û
>C015824
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2583532
2583456
-
Ile
GAT
[Ensembl]
¡û
>C015826
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2424083
2424007
-
Ile
GAT
[Ensembl]
¡û
>C015967
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
653627
653703
+
Ile
GAT
[Ensembl]
¡û
>C015984
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2984121
2984045
-
Ile
GAT
[Ensembl]
¡û
>C015986
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2977998
2977922
-
Ile
GAT
[Ensembl]
¡û
>C015988
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2777692
2777616
-
Ile
GAT
[Ensembl]
¡û
>WENV180101419
OAOU01059292
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
78
2
-
Ile
GAT
[ENA]
¢þ
>w003230
AADI01000008
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
3032
3108
+
Ile
GAT
[ENA]
¡û
>W141195640
AYUI01000002
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
4309
4385
+
Ile
GAT
[ENA]
¡û
>W141195672
AYUI01000042
Gammaproteobacteria
Psychrobacter sp. TB2 [AYUI]
3683
3607
-
Ile
GAT
[ENA]
¡û
>W141199931
AYXM01000015
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
86457
86381
-
Ile
GAT
[ENA]
¡û
>W141199958
AYXM01000069
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
129802
129726
-
Ile
GAT
[ENA]
¡û
>W141199964
AYXM01000077
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
1
77
+
Ile
GAT
[ENA]
¡û
>W141199966
AYXM01000078
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
3679
3603
-
Ile
GAT
[ENA]
¡û
>W141199974
AYXM01000084
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
1900
1976
+
Ile
GAT
[ENA]
¡û
>W141199976
AYXM01000085
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
6643
6567
-
Ile
GAT
[ENA]
¡û
>W141199979
AYXN01000009
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
424
348
-
Ile
GAT
[ENA]
¡û
>W141200004
AYXN01000033
Gammaproteobacteria
Psychrobacter sp. TB15 [AYXN]
3683
3607
-
Ile
GAT
[ENA]
¡û
>W141200498
AYXZ01000024
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
158
234
+
Ile
GAT
[ENA]
¡û
>W141200529
AYXZ01000124
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
163
239
+
Ile
GAT
[ENA]
¡û
>W141200542
AYXZ01000166
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
1
77
+
Ile
GAT
[ENA]
¡û
>W141200544
AYXZ01000167
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
1
77
+
Ile
GAT
[ENA]
¡û
>W141200546
AYXZ01000168
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
1
77
+
Ile
GAT
[ENA]
¡û
>W141200564
AYYA01000043
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
19378
19302
-
Ile
GAT
[ENA]
¡û
>W141200586
AYYA01000075
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
6643
6567
-
Ile
GAT
[ENA]
¡û
>W141200588
AYYA01000080
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
3679
3603
-
Ile
GAT
[ENA]
¡û
>W141200590
AYYA01000081
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
3679
3603
-
Ile
GAT
[ENA]
¡û
>W141200592
AYYA01000082
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
1
77
+
Ile
GAT
[ENA]
¡û
>W141200596
AYYA01000083
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
1
77
+
Ile
GAT
[ENA]
¡û
>C08007201
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
662172
662248
+
Ile
GAT
[Ensembl]
¡û
>C08007219
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2589638
2589565
-
Ile
GAT
[Ensembl]
¡û
>C08007221
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2583532
2583459
-
Ile
GAT
[Ensembl]
¡û
>C08007223
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2424083
2424010
-
Ile
GAT
[Ensembl]
¡û
>WENV182577111
OJGC01007277
[OJGC] seawater metagenome; Sea water
921
845
-
Ile
GAT
[ENA]
¢þ
>WENV182588729
OJHW01010669
[OJHW] seawater metagenome; Sea water
399
323
-
Ile
GAT
[ENA]
¢þ
>WENV170014643
AYSL01002191
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
124
48
-
Ile
GAT
[ENA]
¢þ
>WENV170388138
CETZ01050044
[CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
502
426
-
Ile
GAT
[ENA]
¢þ
>WENV170580658
FUFK010049198
[FUFK] metagenome; unknown
2116
2192
+
Ile
GAT
[ENA]
¢þ
>WENV170585830
FUFK010331496
[FUFK] metagenome; unknown
628
552
-
Ile
GAT
[ENA]
¢þ
>WENV170592309
FUFK010804314
[FUFK] metagenome; unknown
3652
3576
-
Ile
GAT
[ENA]
¢þ
>WENV170593401
FUFK010874759
[FUFK] metagenome; unknown
564
488
-
Ile
GAT
[ENA]
¢þ
>WENV170593598
FUFK010926940
[FUFK] metagenome; unknown
3
79
+
Ile
GAT
[ENA]
¢þ
>WENV170594752
FUFK011458254
[FUFK] metagenome; unknown
15
91
+
Ile
GAT
[ENA]
¢þ
>WENV170595663
FUFK011911938
[FUFK] metagenome; unknown
378
302
-
Ile
GAT
[ENA]
¢þ
>WENV170770157
LXNH01089598
[LXNH] seawater metagenome; marine seawater
218
142
-
Ile
GAT
[ENA]
¢þ
>C181056046
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2418475
2418551
+
Ile
GAT
-
¡û
>C181056059
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1687667
1687591
-
Ile
GAT
-
¡û
>C181056061
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1681544
1681468
-
Ile
GAT
-
¡û
>C181056063
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1675422
1675346
-
Ile
GAT
-
¡û
>C181056065
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1475116
1475040
-
Ile
GAT
-
¡û
>W09103309
AAJC01000005
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
3241
3317
+
Ile
GAT
[ENA]
¡û
>W1910891795
NEXU01000130
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
3698
3622
-
Ile
GAT
[ENA]
¡û
>W1810157408
PJBY01000014
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
3688
3612
-
Ile
GAT
[ENA]
¡û
>W1810671451
QJSU01000019
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
3689
3613
-
Ile
GAT
[ENA]
¡û
>C161042733
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
756480
756556
+
Ile
GAT
-
¡û
>C161042747
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
3238151
3238075
-
Ile
GAT
-
¡û
>C161042749
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
3231879
3231803
-
Ile
GAT
-
¡û
>C161042751
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
3035888
3035812
-
Ile
GAT
-
¡û
>C161042781
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
745899
745975
+
Ile
GAT
[Ensembl]
¡û
>C161042795
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
3341645
3341569
-
Ile
GAT
[Ensembl]
¡û
>C161042797
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
3335370
3335294
-
Ile
GAT
[Ensembl]
¡û
>C161042799
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
3149261
3149185
-
Ile
GAT
[Ensembl]
¡û
>W121043496
AHVZ01000008
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
1760
1836
+
Ile
GAT
[ENA]
¡û
>W121043502
AHVZ01000011
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
119117
119041
-
Ile
GAT
[ENA]
¡û
>W121043521
AHVZ01000037
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
2021
2097
+
Ile
GAT
[ENA]
¡û
>C131017377
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
651977
652053
+
Ile
GAT
[Ensembl]
¡û
>C131017394
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
3003654
3003578
-
Ile
GAT
[Ensembl]
¡û
>C131017396
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2997543
2997467
-
Ile
GAT
[Ensembl]
¡û
>C131017398
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2810811
2810735
-
Ile
GAT
[Ensembl]
¡û
>W1610774100
LNUO01000190
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3717
3641
-
Ile
GAT
[ENA]
¡û
>ENV002521
AY934155
Environmental sample from ENV division of INSDC
101
177
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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