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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158361 (42 seq.)
>W1710861339
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
88714
88640
-
Met
CAT
[ENA]
¡û
>W1711386910
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
282931
282855
-
Met
CAT
[ENA]
¡û
>W1711505565
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
875781
875705
-
Met
CAT
[ENA]
¡û
>WENV180254725
OBEQ010659064
[OBEQ] groundwater metagenome; groundwater
313
388
+
Met
CAT
[ENA]
¡û
>WENV180391248
OBPM01058193
[OBPM] marine metagenome; ENVO:00002010
188
264
+
Met
CAT
[ENA]
¡û
>WENV180591490
OCOV01028480
[OCOV] marine metagenome; ENVO:01000301
273
197
-
Met
CAT
[ENA]
¡û
>WENV181222658
OFDC01000053
[OFDC] hot springs metagenome; Water
129300
129224
-
Met
CAT
[ENA]
¡û
>WENV181844281
OGVV01033128
[OGVV] freshwater metagenome; freshwater
338
414
+
Met
CAT
[ENA]
¡û
>WENV183664804
ORJL010412600
[ORJL] groundwater metagenome; groundwater
293
218
-
Met
CAT
[ENA]
¡û
>WENV170010969
APMI01036877
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
173
247
+
Met
CAT
[ENA]
¡û
>C181143965
CP026951
Actinomycetota
Salinibacterium hongtaonis CGMCC 1.16371 [CP026951]
206570
206646
+
Met
CAT
-
¡û
>W1910784630
MPZN01000044
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
523
449
-
Met
CAT
[ENA]
¡û
>W1910792306
MRAS01000004
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
13893
13967
+
Met
CAT
[ENA]
¡û
>W1911497862
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
10235
10310
+
Met
CAT
[ENA]
¡û
>SRA1004829
SRR006906.154320
metagenomic water samples (SRP000427)
183
107
-
Met
CAT
[SRA]
>SRA1004939
SRR006906.189640
metagenomic water samples (SRP000427)
182
106
-
Met
CAT
[SRA]
>W1810568842
QEEX01000001
Actinomycetota
Salinibacterium hongtaonis S1194 [QEEX]
2007108
2007184
+
Met
CAT
[ENA]
¡û
>W1810917668
QWBV01000020
Actinomycetota
Leucobacter sp. wl10 [QWBV]
70211
70137
-
Met
CAT
[ENA]
¡û
>W2010670663
JACCBD010000001
Actinomycetota
Leucobacter aridicollis DSM 17380 [JACCBD]
3381680
3381606
-
Met
CAT
[ENA]
¡û
>W2010672234
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
75165
75089
-
Met
CAT
[ENA]
¡û
>W2010893219
MPZN01000044
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
523
449
-
Met
CAT
[ENA]
¡û
>W2010900833
MRAS01000004
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
13893
13967
+
Met
CAT
[ENA]
¡û
>W2011158766
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
10235
10310
+
Met
CAT
[ENA]
¡û
>W2011354933
RAQA01000001
Actinomycetota
Microterricola sp. OV434 [RAQA]
89738
89664
-
Met
CAT
[ENA]
¡û
>W2011483695
RQYM01000004
Actinomycetota
Leucobacter sp. OH1287 [RQYM]
128920
128996
+
Met
CAT
[ENA]
¡û
>W2011580494
SHLC01000001
Actinomycetota
Microterricola gilva DSM 18319 [SHLC]
3202008
3201934
-
Met
CAT
[ENA]
¡û
>W2110023509
BMGB01000001
Actinomycetota
Conyzicola nivalis CGMCC 1.12813 [BMGB]
2090980
2090904
-
Met
CAT
[ENA]
¡û
>W2110029914
BMLC01000002
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.5381 [BMLC]
10203
10278
+
Met
CAT
[ENA]
¡û
>W2110051577
BNAI01000002
Actinomycetota
Lysinimonas yzui CGMCC 1.16548 [BNAI]
187408
187483
+
Met
CAT
[ENA]
¡û
>W2110434164
JAENJG010000003
Actinomycetota
Leucobacter sp. L43 [JAENJG]
216456
216530
+
Met
CAT
[ENA]
¡û
>W2110503866
JAFIRG010000010
Actinomycetota
Leucobacter sp. CX328 [JAFIRG]
44717
44791
+
Met
CAT
[ENA]
¡û
>W2110503868
JAFIRG010000010
Actinomycetota
Leucobacter sp. CX328 [JAFIRG]
45046
45120
+
Met
CAT
[ENA]
¡û
>W2110503924
JAFIRH010000010
Actinomycetota
Leucobacter sp. CX42 [JAFIRH]
81407
81333
-
Met
CAT
[ENA]
¡û
>W2110503926
JAFIRH010000010
Actinomycetota
Leucobacter sp. CX42 [JAFIRH]
81079
81005
-
Met
CAT
[ENA]
¡û
>C201276032
CP054056
Actinomycetota
Aquiluna sp. 15G-AUS-rot [CP054056]
1203348
1203272
-
Met
CAT
-
¡û
>C211379350
CP080492
Actinomycetota
Leucobacter luti Wa41.01b-2 [CP080492]
2468843
2468917
+
Met
CAT
-
¡û
>C231140363
CP075339
Actinomycetota
Leucobacter aridicollis J1 [CP075339]
3504399
3504325
-
Met
CAT
-
¡û
>C231355469
CP095043
Actinomycetota
Leucobacter sp. H25R-14 [CP095043]
1626642
1626568
-
Met
CAT
-
¡û
>C241139167
CP049933
Actinomycetota
Leucobacter coleopterorum HDW9A [CP049933]
588613
588687
+
Met
CAT
-
¡û
>W1511432337
JUGL01000009
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
180341
180415
+
Met
CAT
[ENA]
¡û
>C161067248
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
2884342
2884268
-
Met
CAT
[Ensembl]
¡û
>W1610723685
LMDN01000004
Actinomycetota
Leifsonia sp. Root4 [LMDN]
88714
88640
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK