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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158375 (14 seq.)
>W1910211075
FMBP01000004
Betaproteobacteria
Thiomonas sp. X19 [FMBP]
248506
248583
+
Gln
TTG
[ENA]
¡û
>W1910785471
MQNN01000048
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFE1 [MQNN]
12563
12640
+
Gln
TTG
[ENA]
¡û
>W1911072283
NMRM01000041
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFDO [NMRM]
16448
16371
-
Gln
TTG
[ENA]
¡û
>W1911072335
NMRN01000044
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFDCM [NMRN]
16428
16351
-
Gln
TTG
[ENA]
¡û
>WENV026988
AACY021010455
Marine microbial communities from Global Ocean Sampling (GOS)
569
645
+
Gln
TTG
[ENA]
>SRA1001770
SRR001308.44632
Metagenomic characterization of a wastewater treatment plant (SRP000180)
119
195
+
Gln
TTG
[SRA]
>W2010893998
MQNN01000048
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFE1 [MQNN]
12563
12640
+
Gln
TTG
[ENA]
¡û
>WENV030893
AACY021320202
Marine microbial communities from Global Ocean Sampling (GOS)
422
500
+
Gln
TTG
[ENA]
>W2011002418
NMRM01000041
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFDO [NMRM]
16448
16371
-
Gln
TTG
[ENA]
¡û
>W2011002470
NMRN01000044
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum NFDCM [NMRN]
16428
16351
-
Gln
TTG
[ENA]
¡û
>WENV031138
AACY021343299
Marine microbial communities from Global Ocean Sampling (GOS)
191
115
-
Gln
TTG
[ENA]
>WENV031568
AACY021378046
Marine microbial communities from Global Ocean Sampling (GOS)
722
798
+
Gln
TTG
[ENA]
>W2110748473
MDUX01000048
Betaproteobacteria
Candidatus Dactylopiibacterium carminicum [MDUX]
12563
12640
+
Gln
TTG
[ENA]
¡û
>W1710743165
LGUD01000027
Betaproteobacteria
Rhodocyclaceae bacterium Paddy-1 [LGUD]
20316
20392
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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