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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158602 (32 seq.)
>C007567
CP000112
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [CP000112]
1594652
1594575
-
Pro
CGG
[Ensembl]
¡û
>C008096
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
1403234
1403157
-
Pro
CGG
[Ensembl]
¡û
>C008130
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2163497
2163574
+
Pro
CGG
[Ensembl]
¡û
>WENV180851728
ODKV01178875
[ODKV] human metagenome; G_DNA_Stool
204
281
+
Pro
CGG
[ENA]
¢þ
>WENV180972091
ODUU01211502
[ODUU] human metagenome; G_DNA_Stool
88
165
+
Pro
CGG
[ENA]
¢þ
>WENV181240916
OFFE01018043
[OFFE] mouse gut metagenome; faeces
289
212
-
Pro
CGG
[ENA]
¢þ
>WENV181242005
OFFF01020393
[OFFF] mouse gut metagenome; faeces
1736
1813
+
Pro
CGG
[ENA]
¢þ
>WENV181247380
OFFK01020825
[OFFK] mouse gut metagenome; faeces
1899
1976
+
Pro
CGG
[ENA]
¢þ
>WENV181248531
OFFL01008248
[OFFL] mouse gut metagenome; faeces
111
34
-
Pro
CGG
[ENA]
¢þ
>WENV181257828
OFFU01006295
[OFFU] mouse gut metagenome; faeces
282
205
-
Pro
CGG
[ENA]
¢þ
>WENV181261506
OFFX01069051
[OFFX] mouse gut metagenome; faeces
141
64
-
Pro
CGG
[ENA]
¢þ
>WENV181263388
OFFZ01001925
[OFFZ] mouse gut metagenome; faeces
3956
4033
+
Pro
CGG
[ENA]
¢þ
>WENV181271358
OFGF01023386
[OFGF] mouse gut metagenome; faeces
297
220
-
Pro
CGG
[ENA]
¢þ
>WENV181272605
OFGG01029670
[OFGG] mouse gut metagenome; faeces
1227
1304
+
Pro
CGG
[ENA]
¢þ
>WENV181278874
OFGM01030504
[OFGM] mouse gut metagenome; faeces
256
179
-
Pro
CGG
[ENA]
¢þ
>WENV181287764
OFGX01032836
[OFGX] mouse gut metagenome; faeces
1091
1168
+
Pro
CGG
[ENA]
¢þ
>W141169779
AXWQ01000005
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis DSM 16109 [AXWQ]
190504
190581
+
Pro
CGG
[ENA]
¡û
>WENV181908973
OGYB01003142
[OGYB] human gut metagenome; faeces
4574
4497
-
Pro
CGG
[ENA]
¢þ
>W141201063
AZAO01000005
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
77281
77358
+
Pro
CGG
[ENA]
¡û
>WENV182664650
OJMP01009642
[OJMP] human gut metagenome; feces
1990
1913
-
Pro
CGG
[ENA]
¢þ
>WENV183027662
OLFV01000224
[OLFV] human gut metagenome; faeces
34369
34292
-
Pro
CGG
[ENA]
¢þ
>WENV183471173
OMEK01046226
[OMEK] human gut metagenome; feces
4
81
+
Pro
CGG
[ENA]
¢þ
>WENV183764149
PPYE01316520
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1097
1174
+
Pro
CGG
[ENA]
¢þ
>WENV170656249
JTFO01006522
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
488
411
-
Pro
CGG
[ENA]
¢þ
>W09100693
AABN02000006
Thermodesulfobacteriota
Oleidesulfovibrio alaskensis G20 [AABN]
26800
26723
-
Pro
CGG
[ENA]
¡û
>W09106228
AATW01000006
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
38588
38665
+
Pro
CGG
[ENA]
¡û
>W09134092
ACQX01000021
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
8094
8171
+
Pro
CGG
[ENA]
¡û
>W1910020659
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
744716
744639
-
Pro
CGG
[ENA]
¡û
>W1910182290
BJMT01000008
Thermodesulfobacteriota
Desulfovibrio desulfuricans NBRC 13699 [BJMT]
74154
74231
+
Pro
CGG
[ENA]
¡û
>C09104373
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
937777
937854
+
Pro
CGG
[Ensembl]
¡û
>C11107438
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2167018
2167095
+
Pro
CGG
[Ensembl]
¡û
>W11178806
AGFG01000019
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
139537
139614
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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