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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158635 (28 seq.)
>W1711091087
LTBC01000002
Bacillota
Moorella mulderi DSM 14980 [LTBC]
224898
224975
+
Pro
GGG
[ENA]
¡û
>W1711259327
LYVF01000062
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
69537
69614
+
Pro
GGG
[ENA]
¡û
>W1711352250
MDDB01000001
Bacillota
Moorella thermoacetica [MDDB]
282732
282655
-
Pro
GGG
[ENA]
¡û
>W1711352314
MDDC01000005
Bacillota
Moorella thermoacetica [MDDC]
37525
37602
+
Pro
GGG
[ENA]
¡û
>W1711352352
MDDD01000001
Bacillota
Moorella thermoacetica [MDDD]
282162
282085
-
Pro
GGG
[ENA]
¡û
>W1711352430
MDDE01000004
Bacillota
Moorella thermoacetica [MDDE]
132036
131959
-
Pro
GGG
[ENA]
¡û
>W1711428539
MIHH01000004
Bacillota
Moorella thermoacetica [MIHH]
39511
39588
+
Pro
GGG
[ENA]
¡û
>W1711428570
MIIF01000001
Bacillota
Moorella thermoacetica [MIIF]
328207
328130
-
Pro
GGG
[ENA]
¡û
>C171055211
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
1508179
1508102
-
Pro
GGG
-
¡û
>C171058976
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1267999
1267922
-
Pro
GGG
-
¡û
>C014194
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1325060
1324983
-
Pro
GGG
[Ensembl]
¡û
>W141229823
BARR01000044
Bacillota
Moorella thermoacetica Y72 [BARR]
6104
6027
-
Pro
GGG
[ENA]
¡û
>WENV170003942
AGTN01509341
[AGTN] bioreactor metagenome; poplar biomass
337
414
+
Pro
GGG
[ENA]
¢þ
>WENV170679082
LDZU01007173
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1182
1259
+
Pro
GGG
[ENA]
¢þ
>C191073452
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1329398
1329321
-
Pro
GGG
-
¡û
>W09100932
AADT03000017
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
1103
1026
-
Pro
GGG
[ENA]
¡û
>W1910180076
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
679645
679568
-
Pro
GGG
[ENA]
¡û
>W1910180108
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
2525121
2525198
+
Pro
GGG
[ENA]
¡û
>W1810010442
BFFN01000008
Bacillota
Moorella sp. Hama-1 [BFFN]
156482
156559
+
Pro
GGG
[ENA]
¡û
>W1810367283
PVXL01000043
Bacillota
Moorella stamsii DSM 26271 [PVXL]
52490
52413
-
Pro
GGG
[ENA]
¡û
>W1810367346
PVXM01000044
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
1287
1364
+
Pro
GGG
[ENA]
¡û
>C151094380
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1219887
1219810
-
Pro
GGG
-
¡û
>C151094431
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1319421
1319344
-
Pro
GGG
-
¡û
>W1510100273
CELZ01000043
Bacillota
Moorella glycerini NMP [CELZ]
52481
52404
-
Pro
GGG
[ENA]
¡û
>W1510755276
CYSP01000009
Bacillota
Propionispora sp. 2/2-37 Iso2/2 [CYSP]
180921
180998
+
Pro
GGG
[ENA]
¡û
>W1511570807
LAKY01000072
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
111670
111593
-
Pro
GGG
[ENA]
¡û
>W1610925286
LTBC01000002
Bacillota
Moorella mulderi DSM 14980 [LTBC]
224898
224975
+
Pro
GGG
[ENA]
¡û
>W1611021416
LYVF01000062
Bacillota
Desulfotomaculum copahuensis LMa1 [LYVF]
69537
69614
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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