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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158950 (90 seq.)
>W1711055227
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1711089909
LTAB01000043
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
20126
20050
-
Arg
TCT
[ENA]
¡û
>W1711250050
LYMJ01000046
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
20206
20130
-
Arg
TCT
[ENA]
¡û
>W1712084201
NHRH01000018
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
3836
3912
+
Arg
TCT
[ENA]
¡û
>C171019728
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
550178
550102
-
Arg
TCT
-
¡û
>W131196337
ASTG01000001
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
258441
258517
+
Arg
TCT
[ENA]
¡û
>w020466
AAUW01000036
Alphaproteobacteria
Roseibium aggregatum IAM 12614 [AAUW]
20307
20229
-
Arg
TCT
[ENA]
¡û
>WENV180039478
LLBY010077497
[LLBY] soil metagenome; soil from tomato rhizosphere
70
146
+
Arg
TCT
[ENA]
¡û
>WENV180041437
LLBZ010133746
[LLBZ] soil metagenome; soil from tomato rhizosphere
2466
2542
+
Arg
TCT
[ENA]
¡û
>W141078093
ATHO01000055
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
61324
61248
-
Arg
TCT
[ENA]
¡û
>WENV181167544
OEIU01041437
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1020
944
-
Arg
TCT
[ENA]
¡û
>W141200776
AYYG01000044
Alphaproteobacteria
Labrenzia sp. DG1229 [AYYG]
105028
105104
+
Arg
TCT
[ENA]
¡û
>W141231037
BATN01000083
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
3823
3899
+
Arg
TCT
[ENA]
¡û
>W141400542
JDRU02000408
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
1364
1288
-
Arg
TCT
[ENA]
¡û
>W141462316
JFHR01000044
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
27862
27938
+
Arg
TCT
[ENA]
¡û
>C181003251
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
3161982
3161906
-
Arg
TCT
-
¡û
>C191185571
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
280650
280574
-
Arg
TCT
-
¡û
>C191188399
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
3831493
3831569
+
Arg
TCT
-
¡û
>W1910285155
FREW01000007
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
42883
42959
+
Arg
TCT
[ENA]
¡û
>PHG14100008
AB775548
Myoviridae
Pseudomonas phage PPpW-3 NTUH-K2044-K1-1 (AB775548)
21139
21063
-
Arg
TCT
[ENA]
¡û
>W1910649293
LXYF01000038
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
46543
46467
-
Arg
TCT
[ENA]
¡û
>W1910889698
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
1024574
1024650
+
Arg
TCT
[ENA]
¡û
>W1911495400
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1787167
1787243
+
Arg
TCT
[ENA]
¡û
>W1911532370
OGUZ01000002
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
458629
458705
+
Arg
TCT
[ENA]
¡û
>W1810000479
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
1161487
1161563
+
Arg
TCT
[ENA]
¡û
>W1810232552
PPCN01000009
Alphaproteobacteria
Roseibium marinum DSM 17023 [PPCN]
66161
66237
+
Arg
TCT
[ENA]
¡û
>W1810532642
QCYM01000001
Alphaproteobacteria
Labrenzia sp. 011 [QCYM]
486193
486269
+
Arg
TCT
[ENA]
¡û
>C151074575
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
3194559
3194483
-
Arg
TCT
[Ensembl]
¡û
>W2010395418
FREW01000007
Alphaproteobacteria
Labrenzia sp. Alg231-36 [FREW]
42883
42959
+
Arg
TCT
[ENA]
¡û
>W2010644725
JABXJG010000001
Alphaproteobacteria
Sphingobium sp. 15-1 [JABXJG]
1835114
1835190
+
Arg
TCT
[ENA]
¡û
>W2010668013
JACBZE010000001
Alphaproteobacteria
Sphingobium francense DSM 26779 [JACBZE]
840692
840768
+
Arg
TCT
[ENA]
¡û
>W2010794840
LXYF01000038
Alphaproteobacteria
Sphingobium sp. SA916 [LXYF]
46543
46467
-
Arg
TCT
[ENA]
¡û
>W2010954492
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
1024574
1024650
+
Arg
TCT
[ENA]
¡û
>W2011156304
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
1787167
1787243
+
Arg
TCT
[ENA]
¡û
>W2011165129
OGUZ01000002
Alphaproteobacteria
Labrenzia sp. EL143 [OGUZ]
458629
458705
+
Arg
TCT
[ENA]
¡û
>W2011460732
RPFK01000003
Alphaproteobacteria
Sphingobium sp. RSMS [RPFK]
288262
288338
+
Arg
TCT
[ENA]
¡û
>W2011556283
SEOM01000001
Alphaproteobacteria
Sphingobium francense DSM 26779 [SEOM]
456215
456139
-
Arg
TCT
[ENA]
¡û
>W2011556315
SEON01000002
Alphaproteobacteria
Sphingobium fuliginis DSM 18781 [SEON]
65576
65652
+
Arg
TCT
[ENA]
¡û
>W2011647472
SNWC01000005
Alphaproteobacteria
Sphingobium barthaii KK22 24_6 [SNWC]
264737
264661
-
Arg
TCT
[ENA]
¡û
>W2012041373
VIRH01000124
Alphaproteobacteria
Rhodobacterales bacterium BW5 [VIRH]
123849
123773
-
Arg
TCT
[ENA]
¡û
>W2110020550
BMDU01000002
Alphaproteobacteria
Sphingobium fuliginis CCM 7327 [BMDU]
65502
65578
+
Arg
TCT
[ENA]
¡û
>W2110112039
CAJHOG010000001
Alphaproteobacteria
Sphingobium sp. S6 [CAJHOG]
1119982
1120058
+
Arg
TCT
[ENA]
¡û
>W2110112085
CAJHOH010000001
Alphaproteobacteria
Sphingobium sp. S8 [CAJHOH]
1156064
1156140
+
Arg
TCT
[ENA]
¡û
>W2110363076
JADOUI010000012
Alphaproteobacteria
Labrenzia sp. EL_132 [JADOUI]
57565
57489
-
Arg
TCT
[ENA]
¡û
>W2110363103
JADOUJ010000004
Alphaproteobacteria
Labrenzia sp. EL_142 [JADOUJ]
373816
373740
-
Arg
TCT
[ENA]
¡û
>W2110363146
JADOUK010000002
Alphaproteobacteria
Labrenzia sp. EL_162 [JADOUK]
733703
733779
+
Arg
TCT
[ENA]
¡û
>W2110363199
JADOUL010000005
Alphaproteobacteria
Labrenzia sp. EL_195 [JADOUL]
80873
80949
+
Arg
TCT
[ENA]
¡û
>W2110363302
JADOUN010000032
Alphaproteobacteria
Labrenzia sp. EL_126 [JADOUN]
15528
15604
+
Arg
TCT
[ENA]
¡û
>W2110363320
JADOUO010000002
Alphaproteobacteria
Labrenzia sp. EL_159 [JADOUO]
733703
733779
+
Arg
TCT
[ENA]
¡û
>W2110363387
JADOUP010000012
Alphaproteobacteria
Labrenzia sp. EL_208 [JADOUP]
196331
196407
+
Arg
TCT
[ENA]
¡û
>W2110363418
JADOUQ010000002
Alphaproteobacteria
Labrenzia sp. EL_13 [JADOUQ]
333531
333455
-
Arg
TCT
[ENA]
¡û
>W2110423726
JAEKJZ010000001
Alphaproteobacteria
Roseibium aggregatum SY-2-12 [JAEKJZ]
1999518
1999594
+
Arg
TCT
[ENA]
¡û
>W2110688562
JAINEZ010000012
Alphaproteobacteria
Sphingobium sp. PNB [JAINEZ]
19635
19559
-
Arg
TCT
[ENA]
¡û
>C211127879
CP060035
Alphaproteobacteria
Sphingobium barthaii KK22 [CP060035, CP060036]
383462
383386
-
Arg
TCT
-
¡û
>C231191049
CP084405
Alphaproteobacteria
Sphingobium sp. CFD-2 [CP084405, CP084406]
332856
332780
-
Arg
TCT
-
¡û
>C231456769
CP102664
Alphaproteobacteria
Sphingobium sp. JS3065 [CP102664, CP102665]
2223246
2223322
+
Arg
TCT
-
¡û
>W2110772187
VFEK01000001
Alphaproteobacteria
Sphingomonadales bacterium 56 [VFEK]
1119982
1120058
+
Arg
TCT
[ENA]
¡û
>W2110772233
VFEL01000001
Alphaproteobacteria
Sphingomonadales bacterium 58 [VFEL]
1156064
1156140
+
Arg
TCT
[ENA]
¡û
>C231596448
CP117471
Alphaproteobacteria
Sphingobium sp. YC-XJ3 [CP117471]
291622
291546
-
Arg
TCT
-
¡û
>C241095256
CP045354
Alphaproteobacteria
Labrenzia sp. THAF82 [CP045354]
676280
676356
+
Arg
TCT
-
¡û
>C241095258
CP045354
Alphaproteobacteria
Labrenzia sp. THAF82 [CP045354]
680399
680475
+
Arg
TCT
-
¡û
>C241154936
CP053222
Alphaproteobacteria
Sphingobium sp. RSMS [CP053222, CP053223]
274119
274043
-
Arg
TCT
-
¡û
>W10126772
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
180816
180892
+
Arg
TCT
[ENA]
¡û
>C10111668
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
2476281
2476357
+
Arg
TCT
[Ensembl]
¡û
>C11119775
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
1666275
1666351
+
Arg
TCT
[Ensembl]
¡û
>W11134033
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
180816
180892
+
Arg
TCT
[ENA]
¡û
>W1511592114
LBIC01000007
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
527803
527879
+
Arg
TCT
[ENA]
¡û
>W1511646453
LECE01000014
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
71901
71977
+
Arg
TCT
[ENA]
¡û
>C161003355
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
3091812
3091888
+
Arg
TCT
[Ensembl]
¡û
>W1610071986
BCUM01000032
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
20620
20696
+
Arg
TCT
[ENA]
¡û
>W1610076893
BCZC01000020
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15843
15767
-
Arg
TCT
[ENA]
¡û
>W1610092081
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
96766
96690
-
Arg
TCT
[ENA]
¡û
>W1610092147
CXWA01000014
Alphaproteobacteria
Roseibium album alba [CXWA]
47085
47161
+
Arg
TCT
[ENA]
¡û
>W1610092192
CXWC01000017
Alphaproteobacteria
Roseibium album alba [CXWC]
49235
49311
+
Arg
TCT
[ENA]
¡û
>W1610092280
CXWE01000012
Alphaproteobacteria
Roseibium album alba [CXWE]
49235
49311
+
Arg
TCT
[ENA]
¡û
>W121071141
AJXQ01000077
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
5961
5885
-
Arg
TCT
[ENA]
¡û
>W1610540289
JSEP01000008
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
260203
260127
-
Arg
TCT
[ENA]
¡û
>W1610609161
LFVX01000023
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
70715
70639
-
Arg
TCT
[ENA]
¡û
>W1610896273
LRUK01000055
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
20192
20116
-
Arg
TCT
[ENA]
¡û
>W1610924253
LTAB01000043
Alphaproteobacteria
Sphingobium sp. 22B [LTAB]
20126
20050
-
Arg
TCT
[ENA]
¡û
>W1611016932
LYMJ01000046
Alphaproteobacteria
Sphingobium sp. 20006FA paucimobilis [LYMJ]
20206
20130
-
Arg
TCT
[ENA]
¡û
>W1710069188
BCUM01000032
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
20620
20696
+
Arg
TCT
[ENA]
¡û
>W1710074582
BCZC01000020
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
15843
15767
-
Arg
TCT
[ENA]
¡û
>W1710095438
CXTY01000014
Alphaproteobacteria
Roseibium album alba [CXTY]
96766
96690
-
Arg
TCT
[ENA]
¡û
>W1710095504
CXWA01000014
Alphaproteobacteria
Roseibium album alba [CXWA]
47085
47161
+
Arg
TCT
[ENA]
¡û
>W1710095549
CXWC01000017
Alphaproteobacteria
Roseibium album alba [CXWC]
49235
49311
+
Arg
TCT
[ENA]
¡û
>W1710095637
CXWE01000012
Alphaproteobacteria
Roseibium album alba [CXWE]
49235
49311
+
Arg
TCT
[ENA]
¡û
>W1710591662
FRBW01000007
Alphaproteobacteria
Roseibium suaedae [FRBW]
27164
27240
+
Arg
TCT
[ENA]
¡û
>W1710643310
JSEP01000008
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
260203
260127
-
Arg
TCT
[ENA]
¡û
>W1710730448
LFVX01000023
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
70715
70639
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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