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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159045 (36 seq.)
>W131175290
ARJD01000052
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
94783
94859
+
Met
CAT
[ENA]
¡û
>W1711621531
MPDE01000015
Bacteroidota
Bacteroidetes bacterium MedPE-SWsnd-G2 [MPDE]
18705
18631
-
Met
CAT
[ENA]
¡û
>W131225328
AUDM01000003
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
41414
41338
-
Met
CAT
[ENA]
¡û
>C009880
CU207366
Bacteroidota
Christiangramia forsetii KT0803 [CU207366]
3501770
3501846
+
Met
CAT
[Ensembl]
¡û
>w012570
AAMP01000001
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
759100
759024
-
Met
CAT
[ENA]
¡û
>C171092541
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
248710
248784
+
Met
CAT
-
¡û
>WENV181399552
OFSE01041585
[OFSE] wastewater metagenome; Exp Tend VB 50WW
261
335
+
Ile2
CAT
[ENA]
¢þ
>WENV182583770
OJHE01004432
[OJHE] seawater metagenome; Sea water
803
877
+
Ile2
CAT
[ENA]
¢þ
>WENV183522355
OMOM01008378
[OMOM] seawater metagenome; Sea water
483
557
+
Ile2
CAT
[ENA]
¢þ
>WENV183716692
PDWJ01000136
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
89410
89484
+
Ile2
CAT
[ENA]
¢þ
>WENV183725907
PJQF01035308
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
576
502
-
Ile2
CAT
[ENA]
¢þ
>WENV183731743
PJTT01000137
[PJTT] soil metagenome; Soil (2) enriched on wood chips
47670
47596
-
Ile2
CAT
[ENA]
¢þ
>WENV170219342
CEPZ01057464
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
512985
513061
+
Met
CAT
[ENA]
¢þ
>WENV170581350
FUFK010061571
[FUFK] metagenome; unknown
28235
28161
-
Met
CAT
[ENA]
¢þ
>WENV170584044
FUFK010186607
[FUFK] metagenome; unknown
1314
1240
-
Met
CAT
[ENA]
¢þ
>WENV170585814
FUFK010329236
[FUFK] metagenome; unknown
75
1
-
Met
CAT
[ENA]
¢þ
>WENV170590699
FUFK010731649
[FUFK] metagenome; unknown
2429
2505
+
Met
CAT
[ENA]
¢þ
>WENV170591004
FUFK010747498
[FUFK] metagenome; unknown
18
94
+
Met
CAT
[ENA]
¢þ
>WENV170680715
LFEF01013515
[LFEF] freshwater metagenome; waterbloom
446
370
-
Met
CAT
[ENA]
¢þ
>WENV170938939
MDTG01317375
[MDTG] marine metagenome; seawater
3891
3967
+
Met
CAT
[ENA]
¢þ
>WENV170940730
MDTG01348156
[MDTG] marine metagenome; seawater
1143
1069
-
Met
CAT
[ENA]
¢þ
>WENV170943196
MDTG01392146
[MDTG] marine metagenome; seawater
1213
1137
-
Met
CAT
[ENA]
¢þ
>C181074442
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
3461000
3461074
+
Met
CAT
-
¡û
>C191115191
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
1498868
1498794
-
Met
CAT
-
¡û
>C191115316
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
1945865
1945791
-
Met
CAT
-
¡û
>C191115729
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3947381
3947455
+
Met
CAT
-
¡û
>C191161910
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
499927
499853
-
Met
CAT
-
¡û
>C191209954
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1034079
1034153
+
Met
CAT
-
¡û
>W1910577999
JUIX01000008
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
198
124
-
Met
CAT
[ENA]
¡û
>W1910808768
MUGP01000009
Bacteroidota
Chryseobacterium shigense DSM 17126 [MUGP]
94057
94132
+
Met
CAT
[ENA]
¡û
>W1910993951
NKXO01000038
Bacteroidota
Raineya orbicola SPSPC-11 [NKXO]
23287
23361
+
Met
CAT
[ENA]
¡û
>W1610632983
LIQH01000035
Bacteroidota
Lacinutrix algicola [LIQH]
6288
6214
-
Met
CAT
[ENA]
¡û
>W1610633013
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
774153
774227
+
Met
CAT
[ENA]
¡û
>W1710558023
FOLN01000003
Bacteroidota
Algibacter lectus [FOLN]
190710
190784
+
Met
CAT
[ENA]
¡û
>W1710767415
LIQH01000035
Bacteroidota
Lacinutrix algicola [LIQH]
6288
6214
-
Met
CAT
[ENA]
¡û
>W1710767445
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
774153
774227
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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