This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159105 (60 seq.)
>W1710802226
LJXT01000029
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
1777
1853
+
Arg
TCG
[ENA]
¡û
>W1710885889
LMXN01000001
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
402688
402614
-
Arg
TCG
[ENA]
¡û
>W131211899
ATNM01000049
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
51082
51158
+
Arg
TCG
[ENA]
¡û
>W131223105
AUBU01000010
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
241704
241780
+
Arg
TCG
[ENA]
¡û
>W131223197
AUBX01000009
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
858814
858890
+
Arg
TCG
[ENA]
¡û
>W1711704561
MSPQ01000007
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
280834
280910
+
Arg
TCG
[ENA]
¡û
>W1711707894
MSSV01000011
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
43571
43495
-
Arg
TCG
[ENA]
¡û
>W1711707910
MSSW01000003
Bacteroidota
Algoriphagus antarcticus [MSSW]
56658
56582
-
Arg
TCG
[ENA]
¡û
>W1711707969
MSSX01000032
Bacteroidota
Algoriphagus faecimaris [MSSX]
23948
23872
-
Arg
TCG
[ENA]
¡û
>W141039126
ALWO02000023
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
258103
258027
-
Arg
TCG
[ENA]
¡û
>WENV181233756
OFET01000074
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
55134
55060
-
Arg
TCG
[ENA]
¡û
>WENV181234787
OFEU01008936
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
548
474
-
Arg
TCG
[ENA]
¡û
>W141278901
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
1494303
1494379
+
Arg
TCG
[ENA]
¡û
>WENV183615646
OOEB01071467
[OOEB] marine metagenome; sea ice
187
261
+
Arg
TCG
[ENA]
¡û
>WENV183748105
PPFU01011660
[PPFU] hypolithon metagenome; Antarctic Hypolithon
875
949
+
Arg
TCG
[ENA]
¡û
>WENV183748395
PPFU01035058
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1279
1355
+
Arg
TCG
[ENA]
¡û
>WENV170020635
BBPE01015485
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3033
2959
-
Arg
TCG
[ENA]
¡û
>WENV170192624
CEPF01037761
[CEPF] marine metagenome genome assembly TARA_039_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2083
2009
-
Arg
TCG
[ENA]
¡û
>WENV170408982
CEUI01125135
[CEUI] marine metagenome genome assembly TARA_125_MIX_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
756
682
-
Arg
TCG
[ENA]
¡û
>WENV170417303
CEUL01287079
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
416
342
-
Arg
TCG
[ENA]
¡û
>WENV170451401
CEUZ01186162
[CEUZ] marine metagenome genome assembly TARA_125_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
65
139
+
Arg
TCG
[ENA]
¡û
>WENV170981649
MWVT01159184
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
247
321
+
Arg
TCG
[ENA]
¡û
>WENV170988945
MWVY01038048
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
83
7
-
Arg
TCG
[ENA]
¡û
>WENV170991978
MWWA01398069
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
140
66
-
Arg
TCG
[ENA]
¡û
>WENV170994605
MWWE01014785
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
81
5
-
Arg
TCG
[ENA]
¡û
>WENV170995009
MWWE01116630
[MWWE] soil metagenome; MS1-1 sample; Antarctic (ecotone) soil
306
230
-
Arg
TCG
[ENA]
¡û
>W1910932878
NIUC01000001
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
45866
45792
-
Arg
TCG
[ENA]
¡û
>W1911775225
QXML01000006
Bacteroidota
Algoriphagus sp. N3 [QXML]
202802
202728
-
Arg
TCG
[ENA]
¡û
>W1810364982
PVTR01000001
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
234323
234397
+
Arg
TCG
[ENA]
¡û
>W1810606262
QGOL01000003
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
313199
313125
-
Arg
TCG
[ENA]
¡û
>W1810686072
QKZU01000009
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
213892
213966
+
Arg
TCG
[ENA]
¡û
>W1810693462
QLLK01000002
Bacteroidota
Algoriphagus yeomjeoni DSM 23446 [QLLK]
463532
463606
+
Arg
TCG
[ENA]
¡û
>W1810885293
QUNF01000002
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
319363
319437
+
Arg
TCG
[ENA]
¡û
>SRA1026701
SRR035085.263994
454 Sequencing (SRP001806)
316
240
-
Arg
TCG
[SRA]
>W2010104659
BJYV01000015
Bacteroidota
Cyclobacterium qasimii NBRC 106168 [BJYV]
28168
28094
-
Arg
TCG
[ENA]
¡û
>W2010982192
NIUC01000001
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
45866
45792
-
Arg
TCG
[ENA]
¡û
>W2011641086
SMUW01000036
Bacteroidota
Algoriphagus sp. F21 [SMUW]
48029
47955
-
Arg
TCG
[ENA]
¡û
>W2011659165
SOEL01000006
Bacteroidota
Algoriphagus sp. ARW1R1 [SOEL]
13516
13442
-
Arg
TCG
[ENA]
¡û
>W2012084547
VLOG01000012
Bacteroidota
Algoriphagus sp. hg1 [VLOG]
92746
92672
-
Arg
TCG
[ENA]
¡û
>W2012105146
VOLC01000006
Bacteroidota
Cyclobacteriaceae bacterium CUG 91308 [VOLC]
200745
200819
+
Arg
TCG
[ENA]
¡û
>W2012107475
VORV01000001
Bacteroidota
Algoriphagus ratkowskyi IC026 [VORV]
43696
43622
-
Arg
TCG
[ENA]
¡û
>W2012107510
VORW01000002
Bacteroidota
Algoriphagus aquimarinus ACAM 450 [VORW]
351541
351467
-
Arg
TCG
[ENA]
¡û
>W2110404080
JAEAGO010000001
Bacteroidota
Penaeicola halotolerans LMIT005 [JAEAGO]
648008
647932
-
Arg
TCG
[ENA]
¡û
>W2110507406
JAFKCT010000005
Bacteroidota
Algoriphagus sp. H41 [JAFKCT]
226048
225974
-
Arg
TCG
[ENA]
¡û
>W2110651310
JAHVHP010000001
Bacteroidota
Algoriphagus marincola DP5N14-6 [JAHVHP]
1306101
1306175
+
Arg
TCG
[ENA]
¡û
>C211075032
CP048415
Bacteroidota
Algoriphagus sp. NBT04N3 [CP048415]
2010957
2011031
+
Arg
TCG
-
¡û
>C211155687
CP061947
Bacteroidota
Algoriphagus sp. Y33 [CP061947]
1915890
1915964
+
Arg
TCG
-
¡û
>W2110766134
RPHB01000004
Bacteroidota
Arthrospiribacter ruber DPMB0001 [RPHB]
65828
65754
-
Arg
TCG
[ENA]
¡û
>C231502378
CP106735
Bacteroidota
Reichenbachiella sp. Wsw4-B4 [CP106735]
835748
835822
+
Arg
TCG
-
¡û
>C231529107
CP110226
Bacteroidota
Algoriphagus sp. TR-M5 [CP110226]
296377
296303
-
Arg
TCG
-
¡û
>C231565016
CP115160
Bacteroidota
Algoriphagus sp. TR-M9 [CP115160]
1542242
1542168
-
Arg
TCG
-
¡û
>W1610666083
LJXT01000029
Bacteroidota
Algoriphagus marincola HL-49 [LJXT]
1777
1853
+
Arg
TCG
[ENA]
¡û
>W1610747815
LMXN01000001
Bacteroidota
Algoriphagus resistens NH1 [LMXN]
402688
402614
-
Arg
TCG
[ENA]
¡û
>W1710509388
FMXE01000005
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
20755
20831
+
Arg
TCG
[ENA]
¡û
>W1710513395
FNAC01000031
Bacteroidota
Algoriphagus faecimaris [FNAC]
32985
33061
+
Arg
TCG
[ENA]
¡û
>W1710556704
FOKK01000008
Bacteroidota
Algoriphagus aquimarinus [FOKK]
34205
34129
-
Arg
TCG
[ENA]
¡û
>W1710562672
FOPC01000014
Bacteroidota
Algoriphagus hitonicola [FOPC]
15220
15296
+
Arg
TCG
[ENA]
¡û
>W1710571382
FOVW01000002
Bacteroidota
Algoriphagus ornithinivorans [FOVW]
92792
92718
-
Arg
TCG
[ENA]
¡û
>W1710577990
FPBF01000007
Bacteroidota
Algoriphagus locisalis [FPBF]
251713
251789
+
Arg
TCG
[ENA]
¡û
>W1710606948
FWYF01000003
Bacteroidota
Reichenbachiella faecimaris [FWYF]
40041
39965
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK