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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159125 (47 seq.)
>W131169836
ARFA01000053
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
22951
23027
+
Asp
GTC
[ENA]
¡û
>W131169943
ARFD01000076
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
20493
20569
+
Asp
GTC
[ENA]
¡û
>W1711504019
MKUD01000076
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
241
165
-
Asp
GTC
[ENA]
¡û
>W1711769447
MVEC01000003
Bacteroidota
Spirosoma sp. 209 [MVEC]
363273
363349
+
Asp
GTC
[ENA]
¡û
>C171104389
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
4953109
4953185
+
Asp
GTC
-
¡û
>C171104451
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
2407172
2407096
-
Asp
GTC
-
¡û
>WENV181170550
OEIV010057181
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
921
847
-
Asp
GTC
[ENA]
¡û
>C181113137
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
4230619
4230543
-
Asp
GTC
-
¡û
>W1910912868
NHPP01000014
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
77120
77194
+
Asp
GTC
[ENA]
¡û
>W1910939724
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15495
15421
-
Asp
GTC
[ENA]
¡û
>W1910939725
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15378
15304
-
Asp
GTC
[ENA]
¡û
>W1911070285
NMPS01000216
Bacteroidota
Siphonobacter sp. BAB-5385 [NMPS]
14784
14710
-
Asp
GTC
[ENA]
¡û
>W1911497297
OCNH01000007
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
256405
256481
+
Asp
GTC
[ENA]
¡û
>W1810195641
PKRS01000003
Bacteroidota
Emticicia sp. TH156 [PKRS]
171025
170951
-
Asp
GTC
[ENA]
¡û
>W1810305994
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2964063
2963989
-
Asp
GTC
[ENA]
¡û
>W1810305995
PTRA01000001
Bacteroidota
Siphonobacter curvatus HR-U [PTRA]
2963948
2963874
-
Asp
GTC
[ENA]
¡û
>W1810364364
PVTE01000004
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
88322
88246
-
Asp
GTC
[ENA]
¡û
>W1810692078
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
7815638
7815714
+
Asp
GTC
[ENA]
¡û
>W1810913022
QVMT01000001
Bacteroidota
Emticicia sp. C21 [QVMT]
397280
397206
-
Asp
GTC
[ENA]
¡û
>SRA1014971
SRR023845.403438
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
101
25
-
Asp
GTC
[SRA]
>C151068637
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2093412
2093336
-
Asp
GTC
[Ensembl]
¡û
>W2010459329
JAAFZH010000001
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
1153668
1153744
+
Asp
GTC
[ENA]
¡û
>W2010468885
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
1153859
1153935
+
Asp
GTC
[ENA]
¡û
>W2010685243
JACETV010000001
Bacteroidota
Emticicia sp. BO119 [JACETV]
513800
513874
+
Asp
GTC
[ENA]
¡û
>W2010732135
JACIJQ010000004
Bacteroidota
Porphyromonas circumdentaria DSM 103022 [JACIJQ]
73134
73060
-
Asp
GTC
[ENA]
¡û
>W2010966547
NHPP01000014
Bacteroidota
Siphonobacter sp. BAB-5404 [NHPP]
77120
77194
+
Asp
GTC
[ENA]
¡û
>W2010983041
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15495
15421
-
Asp
GTC
[ENA]
¡û
>W2010983042
NJAG01000024
Bacteroidota
Siphonobacter sp. BAB-5405 [NJAG]
15378
15304
-
Asp
GTC
[ENA]
¡û
>W2011000784
NMPS01000216
Bacteroidota
Siphonobacter sp. BAB-5385 [NMPS]
14784
14710
-
Asp
GTC
[ENA]
¡û
>W2011158201
OCNH01000007
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
256405
256481
+
Asp
GTC
[ENA]
¡û
>W2011532739
SBLB01000001
Bacteroidota
Spirosoma sp. TY50 [SBLB]
910827
910901
+
Asp
GTC
[ENA]
¡û
>W2011557835
SEWF01000064
Bacteroidota
Emticicia sp. 17J42-9 [SEWF]
26099
26173
+
Asp
GTC
[ENA]
¡û
>W2011705634
SWJG01000001
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
1385199
1385123
-
Asp
GTC
[ENA]
¡û
>W2012412140
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
7815638
7815714
+
Asp
GTC
[ENA]
¡û
>W2012412173
WPIN01000001
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
547913
547837
-
Asp
GTC
[ENA]
¡û
>W2110282940
JACWZY010000008
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
191507
191581
+
Asp
GTC
[ENA]
¡û
>W2110283020
JACXAA010000002
Bacteroidota
Spirosoma validum BT704 [JACXAA]
525460
525384
-
Asp
GTC
[ENA]
¡û
>C211124474
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
609487
609411
-
Asp
GTC
-
¡û
>C231263201
CP089538
Bacteroidota
Spirosoma sp. RHs26 [CP089538]
4651637
4651713
+
Asp
GTC
-
¡û
>C231576634
CP116301
Bacteroidota
Tenacibaculum finnmarkense 17-2576-1 [CP116301]
2367642
2367716
+
Asp
GTC
-
¡û
>C241057073
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
5507486
5507562
+
Asp
GTC
-
¡û
>C241140699
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
2309906
2309830
-
Asp
GTC
-
¡û
>C241156299
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
1382728
1382804
+
Asp
GTC
-
¡û
>C241171855
CP056032
Bacteroidota
Spirosoma sp. KUDC1026 [CP056032]
1781562
1781486
-
Asp
GTC
-
¡û
>C10111762
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3737965
3738041
+
Asp
GTC
[Ensembl]
¡û
>W1710521846
FNGS01000004
Bacteroidota
Siphonobacter aquaeclarae [FNGS]
76019
75943
-
Asp
GTC
[ENA]
¡û
>W1710558187
FOLQ01000002
Bacteroidota
Spirosoma endophyticum [FOLQ]
38037
37961
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK