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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159154 (123 seq.)
>W1711005346
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
388425
388349
-
Val
GAC
[ENA]
¡û
>W1711005347
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
388320
388244
-
Val
GAC
[ENA]
¡û
>W1711010005
LQQZ01000010
Gammaproteobacteria
Proteus mirabilis [LQQZ]
10232
10308
+
Val
GAC
[ENA]
¡û
>W1711010006
LQQZ01000010
Gammaproteobacteria
Proteus mirabilis [LQQZ]
10337
10413
+
Val
GAC
[ENA]
¡û
>W1711339041
MBTY01000022
Gammaproteobacteria
Proteus mirabilis [MBTY]
55396
55320
-
Val
GAC
[ENA]
¡û
>W1711339042
MBTY01000022
Gammaproteobacteria
Proteus mirabilis [MBTY]
55291
55215
-
Val
GAC
[ENA]
¡û
>W1711383810
MECU01000044
Gammaproteobacteria
Shigella sp. FC130 [MECU]
178572
178648
+
Val
GAC
[ENA]
¡û
>W1711430349
MIIZ01001375
Gammaproteobacteria
Shigella sp. FC1967 [MIIZ]
1590
1666
+
Val
GAC
[ENA]
¡û
>W1711797873
MWUC01000039
Gammaproteobacteria
Morganella morganii [MWUC]
41724
41800
+
Val
GAC
[ENA]
¡û
>W1711797874
MWUC01000039
Gammaproteobacteria
Morganella morganii [MWUC]
41830
41906
+
Val
GAC
[ENA]
¡û
>W1711972163
NDBP01000036
Gammaproteobacteria
Morganella morganii [NDBP]
336115
336039
-
Val
GAC
[ENA]
¡û
>W1712019994
NEYX01000001
Gammaproteobacteria
Proteus mirabilis [NEYX]
927085
927161
+
Val
GAC
[ENA]
¡û
>C171103405
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
3169775
3169699
-
Val
GAC
-
¡û
>C171103406
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
3169670
3169594
-
Val
GAC
-
¡û
>C171121716
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
2424773
2424697
-
Val
GAC
-
¡û
>C171121717
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
2424668
2424592
-
Val
GAC
-
¡û
>C171124266
CP021852
Gammaproteobacteria
Proteus mirabilis AR_0156 [CP021852]
77195
77271
+
Val
GAC
-
¡û
>C171124267
CP021852
Gammaproteobacteria
Proteus mirabilis AR_0156 [CP021852]
77300
77376
+
Val
GAC
-
¡û
>WENV180456546
OBXR01000012
[OBXR] human gut metagenome; faeces
207362
207286
-
Val
GAC
[ENA]
¢þ
>WENV180456547
OBXR01000012
[OBXR] human gut metagenome; faeces
207257
207181
-
Val
GAC
[ENA]
¢þ
>WENV180497342
OCAE01001298
[OCAE] human gut metagenome; faeces
10549
10473
-
Val
GAC
[ENA]
¢þ
>WENV180497343
OCAE01001298
[OCAE] human gut metagenome; faeces
10443
10367
-
Val
GAC
[ENA]
¢þ
>W141212945
AZRH01000003
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
254522
254598
+
Val
GAC
[ENA]
¡û
>W141212946
AZRH01000003
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
254628
254704
+
Val
GAC
[ENA]
¡û
>WENV182403957
OIEU01000903
[OIEU] human gut metagenome; human gut
4045
4121
+
Val
GAC
[ENA]
¢þ
>W141256846
CBWE010000013
Gammaproteobacteria
Morganella morganii IS15 [CBWE]
145658
145734
+
Val
GAC
[ENA]
¡û
>W141256847
CBWE010000013
Gammaproteobacteria
Morganella morganii IS15 [CBWE]
145764
145840
+
Val
GAC
[ENA]
¡û
>WENV182798726
OJTN01000027
[OJTN] human gut metagenome; human gut
12212
12288
+
Val
GAC
[ENA]
¢þ
>WENV182798727
OJTN01000027
[OJTN] human gut metagenome; human gut
12317
12393
+
Val
GAC
[ENA]
¢þ
>WENV182798831
OJTO01000019
[OJTO] human gut metagenome; human gut
20317
20241
-
Val
GAC
[ENA]
¢þ
>WENV182798832
OJTO01000019
[OJTO] human gut metagenome; human gut
20212
20136
-
Val
GAC
[ENA]
¢þ
>WENV182856819
OKNQ01000264
[OKNQ] human gut metagenome; human gut
5374
5298
-
Val
GAC
[ENA]
¢þ
>C08007484
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
1481785
1481861
+
Val
GAC
[Ensembl]
¡û
>C08007485
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
1481890
1481966
+
Val
GAC
[Ensembl]
¡û
>WENV183066787
OLIL01001179
[OLIL] metagenome; faeces
6414
6338
-
Val
GAC
[ENA]
¢þ
>WENV183066788
OLIL01001179
[OLIL] metagenome; faeces
6308
6232
-
Val
GAC
[ENA]
¢þ
>WENV183772192
PPYF01016672
[PPYF] human gut metagenome; stool from patient with Crohn's disease
492099
492174
+
Val
GAC
[ENA]
¢þ
>WENV183788572
PPYF01370170
[PPYF] human gut metagenome; stool from patient with Crohn's disease
45132
45207
+
Val
GAC
[ENA]
¢þ
>WENV183788644
PPYF01370203
[PPYF] human gut metagenome; stool from patient with Crohn's disease
164913
164988
+
Val
GAC
[ENA]
¢þ
>C181123744
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
2035277
2035353
+
Val
GAC
-
¡û
>C181123745
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
2035383
2035459
+
Val
GAC
-
¡û
>C181125715
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
1573701
1573625
-
Val
GAC
-
¡û
>C181125716
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
1573596
1573520
-
Val
GAC
-
¡û
>C181134887
CP026571
Gammaproteobacteria
Proteus mirabilis BC11-24 [CP026571]
2002453
2002529
+
Val
GAC
-
¡û
>C181134888
CP026571
Gammaproteobacteria
Proteus mirabilis BC11-24 [CP026571]
2002558
2002634
+
Val
GAC
-
¡û
>C181135056
CP026581
Gammaproteobacteria
Proteus mirabilis [CP026581]
2155089
2155165
+
Val
GAC
-
¡û
>C181135057
CP026581
Gammaproteobacteria
Proteus mirabilis [CP026581]
2155194
2155270
+
Val
GAC
-
¡û
>C181217573
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
1783103
1783027
-
Val
GAC
-
¡û
>C181217574
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
1782997
1782921
-
Val
GAC
-
¡û
>C191099469
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
1704284
1704208
-
Val
GAC
-
¡û
>C191099470
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
1704178
1704102
-
Val
GAC
-
¡û
>C191110609
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
1291325
1291249
-
Val
GAC
-
¡û
>C191110610
CP033736
Gammaproteobacteria
Proteus vulgaris FDAARGOS_556 [CP033736]
1291220
1291144
-
Val
GAC
-
¡û
>C191193628
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
1709410
1709334
-
Val
GAC
-
¡û
>C191193629
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
1709304
1709228
-
Val
GAC
-
¡û
>W141804901
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
1045123
1045199
+
Val
GAC
[ENA]
¡û
>W141804902
JPIX01000001
Gammaproteobacteria
Proteus vulgaris [JPIX]
1045228
1045304
+
Val
GAC
[ENA]
¡û
>C141003722
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
2636496
2636572
+
Val
GAC
[Ensembl]
¡û
>C141003723
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
2636602
2636678
+
Val
GAC
[Ensembl]
¡û
>W1911137259
NOWB01000003
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
219403
219327
-
Val
GAC
[ENA]
¡û
>W1911137260
NOWB01000003
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
219298
219222
-
Val
GAC
[ENA]
¡û
>W1911137261
NOWB01000003
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
219193
219117
-
Val
GAC
[ENA]
¡û
>W1911581012
PENU01000006
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
116327
116251
-
Val
GAC
[ENA]
¡û
>W1911581013
PENU01000006
Gammaproteobacteria
Proteus terrae 5 str. ATCC 51470 [PENU]
116221
116145
-
Val
GAC
[ENA]
¡û
>W1810006203
BFCJ01000190
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
14654
14730
+
Val
GAC
[ENA]
¡û
>W1810006204
BFCJ01000190
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
14760
14836
+
Val
GAC
[ENA]
¡û
>W1810006252
BFCK01000233
Gammaproteobacteria
Proteus mirabilis MH13-009N [BFCK]
5292
5216
-
Val
GAC
[ENA]
¡û
>W1810006253
BFCK01000233
Gammaproteobacteria
Proteus mirabilis MH13-009N [BFCK]
5187
5111
-
Val
GAC
[ENA]
¡û
>W1810011786
BGKU01000027
Gammaproteobacteria
Proteus mirabilis TUM11569 [BGKU]
9517
9593
+
Val
GAC
[ENA]
¡û
>W1810011787
BGKU01000027
Gammaproteobacteria
Proteus mirabilis TUM11569 [BGKU]
9622
9698
+
Val
GAC
[ENA]
¡û
>W1810011835
BGKV01000016
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
72464
72388
-
Val
GAC
[ENA]
¡û
>W1810011836
BGKV01000016
Gammaproteobacteria
Proteus mirabilis TUM11570 [BGKV]
72359
72283
-
Val
GAC
[ENA]
¡û
>W1810080927
PENS01000013
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
58429
58505
+
Val
GAC
[ENA]
¡û
>W1810080928
PENS01000013
Gammaproteobacteria
Proteus terrae LMG 28659 [PENS]
58535
58611
+
Val
GAC
[ENA]
¡û
>W1810081064
PENX01000004
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
94486
94562
+
Val
GAC
[ENA]
¡û
>W1810081065
PENX01000004
Gammaproteobacteria
Proteus sp. CA142267 [PENX]
94592
94668
+
Val
GAC
[ENA]
¡û
>W1810081244
PENZ01000034
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
137468
137392
-
Val
GAC
[ENA]
¡û
>W1810081245
PENZ01000034
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
137362
137286
-
Val
GAC
[ENA]
¡û
>W1810081246
PENZ01000034
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
137256
137180
-
Val
GAC
[ENA]
¡û
>W1810081247
PENZ01000034
Gammaproteobacteria
Proteus faecis TJ1636 [PENZ]
137150
137074
-
Val
GAC
[ENA]
¡û
>W1810107904
PHFJ01000003
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
91924
92000
+
Val
GAC
[ENA]
¡û
>W1810107905
PHFJ01000003
Gammaproteobacteria
Proteus penneri ATCC 33519 [PHFJ]
92030
92106
+
Val
GAC
[ENA]
¡û
>W1810173805
PJNJ01000012
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
62910
62986
+
Val
GAC
[ENA]
¡û
>W1810190180
PKJR01000001
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
1099891
1099967
+
Val
GAC
[ENA]
¡û
>W1810190181
PKJR01000001
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
1099997
1100073
+
Val
GAC
[ENA]
¡û
>W1810583141
QEXA01000001
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
517722
517798
+
Val
GAC
[ENA]
¡û
>W1810583142
QEXA01000001
Gammaproteobacteria
Proteus faecis 08MAS1600 [QEXA]
517828
517904
+
Val
GAC
[ENA]
¡û
>W1810595559
QGGA01000001
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
182101
182177
+
Val
GAC
[ENA]
¡û
>W1810595560
QGGA01000001
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
182206
182282
+
Val
GAC
[ENA]
¡û
>W1810762174
QPMG01000004
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
94486
94562
+
Val
GAC
[ENA]
¡û
>W1810762175
QPMG01000004
Gammaproteobacteria
Proteus sp. CA142267 [QPMG]
94592
94668
+
Val
GAC
[ENA]
¡û
>W1511394309
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
1877988
1877912
-
Val
GAC
[ENA]
¡û
>W1511394310
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
1877883
1877807
-
Val
GAC
[ENA]
¡û
>W1511394351
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
1926228
1926304
+
Val
GAC
[ENA]
¡û
>W1511394352
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
1926333
1926409
+
Val
GAC
[ENA]
¡û
>W1511396323
JTBW01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [JTBW]
1573670
1573594
-
Val
GAC
[ENA]
¡û
>W1511396324
JTBW01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [JTBW]
1573565
1573489
-
Val
GAC
[ENA]
¡û
>W1511454115
JVFU01000036
Gammaproteobacteria
Proteus mirabilis 47_PMIR [JVFU]
167
91
-
Val
GAC
[ENA]
¡û
>W1511456216
JVHK01000020
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
72889
72813
-
Val
GAC
[ENA]
¡û
>W1511456217
JVHK01000020
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
72784
72708
-
Val
GAC
[ENA]
¡û
>W1511456218
JVHK01000020
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
72679
72603
-
Val
GAC
[ENA]
¡û
>W1511456219
JVHK01000020
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
72574
72498
-
Val
GAC
[ENA]
¡û
>W1511470118
JVWE01000053
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
167
91
-
Val
GAC
[ENA]
¡û
>W1511565712
LAGC01000006
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
79214
79138
-
Val
GAC
[ENA]
¡û
>W1511565713
LAGC01000006
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
79108
79032
-
Val
GAC
[ENA]
¡û
>W1511638129
LDNQ01000944
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
3972
4048
+
Val
GAC
[ENA]
¡û
>W1511638130
LDNQ01000944
Gammaproteobacteria
Morganella morganii SA36 [LDNQ]
4078
4154
+
Val
GAC
[ENA]
¡û
>C161086419
CP015347
Gammaproteobacteria
Proteus mirabilis AOUC-001 [CP015347]
1836376
1836300
-
Val
GAC
-
¡û
>C161086420
CP015347
Gammaproteobacteria
Proteus mirabilis AOUC-001 [CP015347]
1836271
1836195
-
Val
GAC
-
¡û
>W121111810
ALJX01000002
Gammaproteobacteria
Morganella morganii subsp. morganii KT [ALJX]
244331
244255
-
Val
GAC
[ENA]
¡û
>W121111811
ALJX01000002
Gammaproteobacteria
Morganella morganii subsp. morganii KT [ALJX]
244225
244149
-
Val
GAC
[ENA]
¡û
>W1610077903
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
370125
370049
-
Val
GAC
[ENA]
¡û
>W1610077904
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
370019
369943
-
Val
GAC
[ENA]
¡û
>W1610540575
JSUO01000068
Gammaproteobacteria
Proteus mirabilis [JSUO]
13975
14051
+
Val
GAC
[ENA]
¡û
>W1610540576
JSUO01000068
Gammaproteobacteria
Proteus mirabilis [JSUO]
14080
14156
+
Val
GAC
[ENA]
¡û
>W1610855996
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
388425
388349
-
Val
GAC
[ENA]
¡û
>W1610855997
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
388320
388244
-
Val
GAC
[ENA]
¡û
>W1610858525
LQQZ01000010
Gammaproteobacteria
Proteus mirabilis [LQQZ]
10232
10308
+
Val
GAC
[ENA]
¡û
>W1610858526
LQQZ01000010
Gammaproteobacteria
Proteus mirabilis [LQQZ]
10337
10413
+
Val
GAC
[ENA]
¡û
>W1710075461
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
370125
370049
-
Val
GAC
[ENA]
¡û
>W1710075462
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
370019
369943
-
Val
GAC
[ENA]
¡û
>W1710643596
JSUO01000068
Gammaproteobacteria
Proteus mirabilis [JSUO]
13975
14051
+
Val
GAC
[ENA]
¡û
>W1710643597
JSUO01000068
Gammaproteobacteria
Proteus mirabilis [JSUO]
14080
14156
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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