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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159267 (18 seq.)
>W1911076345
NMVK01000036
Actinomycetota
Propionibacteriaceae bacterium NML 150272 [NMVK]
198985
198909
-
Met
CAT
[ENA]
¡û
>W1911076392
NMVL01000030
Actinomycetota
Propionibacteriaceae bacterium NML 140250 [NMVL]
99820
99896
+
Met
CAT
[ENA]
¡û
>W1911076397
NMVM01000001
Actinomycetota
Propionibacteriaceae bacterium NML 090529 [NMVM]
822393
822469
+
Met
CAT
[ENA]
¡û
>W1911076451
NMVN01000001
Actinomycetota
Propionibacteriaceae bacterium NML 061049 [NMVN]
139818
139742
-
Met
CAT
[ENA]
¡û
>W1911076533
NMVO01000019
Actinomycetota
Propionibacteriaceae bacterium NML 030167 [NMVO]
43803
43879
+
Met
CAT
[ENA]
¡û
>W1911076545
NMVP01000001
Actinomycetota
Propionibacteriaceae bacterium NML 020265 [NMVP]
29634
29558
-
Met
CAT
[ENA]
¡û
>W1911076628
NMVQ01000046
Actinomycetota
Propionibacteriaceae bacterium NML 130396 [NMVQ]
93628
93551
-
Met
CAT
[ENA]
¡û
>W1911575880
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
1582112
1582036
-
Met
CAT
[ENA]
¡û
>W2010592413
JABENC010000007
Actinomycetota
Naumannella sp. ID2617S [JABENC]
86195
86118
-
Ile2
CAT
[ENA]
¡û
>W2011005321
NMVK01000036
Actinomycetota
Propionibacteriaceae bacterium NML 150272 [NMVK]
198985
198909
-
Ile2
CAT
[ENA]
¡û
>W2011005368
NMVL01000030
Actinomycetota
Propionibacteriaceae bacterium NML 140250 [NMVL]
99820
99896
+
Ile2
CAT
[ENA]
¡û
>W2011005373
NMVM01000001
Actinomycetota
Propionibacteriaceae bacterium NML 090529 [NMVM]
822393
822469
+
Ile2
CAT
[ENA]
¡û
>W2011005427
NMVN01000001
Actinomycetota
Propionibacteriaceae bacterium NML 061049 [NMVN]
139818
139742
-
Ile2
CAT
[ENA]
¡û
>W2011005509
NMVO01000019
Actinomycetota
Propionibacteriaceae bacterium NML 030167 [NMVO]
43803
43879
+
Ile2
CAT
[ENA]
¡û
>W2011005521
NMVP01000001
Actinomycetota
Propionibacteriaceae bacterium NML 020265 [NMVP]
29634
29558
-
Ile2
CAT
[ENA]
¡û
>W2011005604
NMVQ01000046
Actinomycetota
Propionibacteriaceae bacterium NML 130396 [NMVQ]
93628
93551
-
Ile2
CAT
[ENA]
¡û
>W2011185694
PDJP01000001
Actinomycetota
Propionibacteriaceae bacterium ES.041 [PDJP]
1582112
1582036
-
Ile2
CAT
[ENA]
¡û
>W2011648681
SNXA01000008
Actinomycetota
Ponticoccus gilvus DSM 21351 [SNXA]
163353
163277
-
Ile2
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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