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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159305 (37 seq.)
>W1710777264
LJBJ02000001
Actinomycetota
Rothia kristinae [LJBJ]
247500
247576
+
Met
CAT
[ENA]
¡û
>W1711178707
LWGZ01000100
Actinomycetota
Rothia kristinae [LWGZ]
1417
1493
+
Met
CAT
[ENA]
¡û
>W1711589224
MODZ01000017
Actinomycetota
Rothia kristinae [MODZ]
18583
18509
-
Met
CAT
[ENA]
¡û
>W1711706612
MSRF01000349
Bacillota
Bacillus sp. VT-16-64 [MSRF]
90
166
+
Met
CAT
[ENA]
¡û
>WENV183511541
OMJG01000730
[OMJG] food metagenome; Cotija cheese
18541
18467
-
Met
CAT
[ENA]
¡û
>W1910334096
FSNK01000092
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 133 [FSNK]
3669
3743
+
Met
CAT
[ENA]
¡û
>W1911114755
NOIU01000003
Actinomycetota
Kocuria halotolerans JCM 31975 [NOIU]
215828
215903
+
Met
CAT
[ENA]
¡û
>W1911114796
NOIV01000003
Actinomycetota
Kocuria kristinae ATCC 27570 [NOIV]
247573
247647
+
Met
CAT
[ENA]
¡û
>W2011009266
NOIU01000003
Actinomycetota
Kocuria halotolerans JCM 31975 [NOIU]
215828
215903
+
Met
CAT
[ENA]
¡û
>W2011009307
NOIV01000003
Actinomycetota
Kocuria kristinae ATCC 27570 [NOIV]
247573
247647
+
Met
CAT
[ENA]
¡û
>W2011649599
SNXQ01000008
Actinomycetota
Kocuria sp. AG109 [SNXQ]
247635
247709
+
Met
CAT
[ENA]
¡û
>W2011760406
UASQ01000021
Actinomycetota
Rothia kristinae NCTC11038 [UASQ]
217844
217770
-
Met
CAT
[ENA]
¡û
>W2012006755
VEKI01000012
Actinomycetota
Rothia kristinae DE0322 [VEKI]
89855
89781
-
Met
CAT
[ENA]
¡û
>W2110371584
JADPWM010000016
Actinomycetota
Rothia kristinae GM [JADPWM]
52952
53026
+
Met
CAT
[ENA]
¡û
>W2110696604
JAIUDH010000006
Actinomycetota
Rothia kristinae alder54 [JAIUDH]
89483
89409
-
Met
CAT
[ENA]
¡û
>C211214264
CP065738
Actinomycetota
Rothia kristinae FDAARGOS_864 [CP065738]
1619433
1619507
+
Met
CAT
-
¡û
>C211222120
CP066078
Actinomycetota
Rothia kristinae FDAARGOS_1001 [CP066078]
670447
670373
-
Met
CAT
-
¡û
>C231551807
CP113782
Actinomycetota
Rothia kristinae ND-2018N [CP113782]
1709477
1709403
-
Met
CAT
-
¡û
>W2130019310
JADDTO010000279
Actinomycetota
H6(2020) [JADDTO]
3464
3390
-
Met
CAT
[ENA]
¡û
>W1610069440
BCSM01000003
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
66512
66436
-
Met
CAT
[ENA]
¡û
>W1610590058
LDRD01000003
Actinomycetota
Rothia kristinae [LDRD]
4933
4857
-
Met
CAT
[ENA]
¡û
>W1610590135
LDRE01000076
Actinomycetota
Rothia kristinae [LDRE]
4030
3954
-
Met
CAT
[ENA]
¡û
>W1610590183
LDRF01000079
Actinomycetota
Rothia kristinae [LDRF]
21885
21961
+
Met
CAT
[ENA]
¡û
>W1610590198
LDRG01000011
Actinomycetota
Rothia kristinae [LDRG]
4029
3953
-
Met
CAT
[ENA]
¡û
>W1610590241
LDRH01000030
Actinomycetota
Rothia kristinae [LDRH]
5159
5083
-
Met
CAT
[ENA]
¡û
>W1610590289
LDRI01000031
Actinomycetota
Rothia kristinae [LDRI]
3694
3618
-
Met
CAT
[ENA]
¡û
>W1610590337
LDRJ01000055
Actinomycetota
Rothia kristinae [LDRJ]
41775
41851
+
Met
CAT
[ENA]
¡û
>W1610641450
LJBJ02000001
Actinomycetota
Rothia kristinae [LJBJ]
247500
247576
+
Met
CAT
[ENA]
¡û
>W1610986754
LWGZ01000100
Actinomycetota
Rothia kristinae [LWGZ]
1417
1493
+
Met
CAT
[ENA]
¡û
>W1710066813
BCSM01000003
Actinomycetota
Rothia kristinae NBRC 15354 [BCSM]
66512
66436
-
Met
CAT
[ENA]
¡û
>W1710709338
LDRD01000003
Actinomycetota
Rothia kristinae [LDRD]
4933
4857
-
Met
CAT
[ENA]
¡û
>W1710709415
LDRE01000076
Actinomycetota
Rothia kristinae [LDRE]
4030
3954
-
Met
CAT
[ENA]
¡û
>W1710709463
LDRF01000079
Actinomycetota
Rothia kristinae [LDRF]
21885
21961
+
Met
CAT
[ENA]
¡û
>W1710709478
LDRG01000011
Actinomycetota
Rothia kristinae [LDRG]
4029
3953
-
Met
CAT
[ENA]
¡û
>W1710709521
LDRH01000030
Actinomycetota
Rothia kristinae [LDRH]
5159
5083
-
Met
CAT
[ENA]
¡û
>W1710709569
LDRI01000031
Actinomycetota
Rothia kristinae [LDRI]
3694
3618
-
Met
CAT
[ENA]
¡û
>W1710709617
LDRJ01000055
Actinomycetota
Rothia kristinae [LDRJ]
41775
41851
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK