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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159316 (85 seq.)
>W1710811740
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1710865770
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>W1710875276
LMOG01000018
Gammaproteobacteria
Xanthomonas sp. Leaf131 [LMOG]
24942
25018
+
Pro
GGG
[ENA]
¡û
>W1710875715
LMOP01000010
Gammaproteobacteria
Xanthomonas sp. Leaf148 [LMOP]
29227
29303
+
Pro
GGG
[ENA]
¡û
>C171082831
CP018728
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri JS749-3 [CP018728]
2618595
2618671
+
Pro
GGG
-
¡û
>C171082887
CP018731
Gammaproteobacteria
Xanthomonas hortorum pv. gardneri ICMP 7383 [CP018731]
2067903
2067979
+
Pro
GGG
-
¡û
>W131231914
AUIV01000010
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
81924
82000
+
Pro
GGG
[ENA]
¡û
>W141003895
AEEU01000162
Gammaproteobacteria
Xanthomonas hortorum pv. carotae str. M081 [AEEU]
22356
22280
-
Pro
GGG
[ENA]
¡û
>WENV180298317
OBJA01272481
[OBJA] soil metagenome; sediment, water from around vicinity
215
291
+
Pro
GGG
[ENA]
¢þ
>WENV181171929
OEIV010410522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
171
95
-
Pro
GGG
[ENA]
¢þ
>WENV183731534
PJTT01000018
[PJTT] soil metagenome; Soil (2) enriched on wood chips
227478
227554
+
Pro
GGG
[ENA]
¢þ
>WENV183732065
PJTV01000005
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
122418
122342
-
Pro
GGG
[ENA]
¢þ
>WENV170009710
APMI01002088
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
298
222
-
Pro
GGG
[ENA]
¢þ
>WENV170010720
APMI01026094
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2103
2179
+
Pro
GGG
[ENA]
¢þ
>WENV170011123
APMI01044653
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2090
2014
-
Pro
GGG
[ENA]
¢þ
>WENV170011975
APMI01107486
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2410
2486
+
Pro
GGG
[ENA]
¢þ
>WENV170574464
FLYM01041370
[FLYM] hot springs metagenome; Sediment
113
37
-
Pro
GGG
[ENA]
¢þ
>WENV170650628
JRYE01007282
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
469
545
+
Pro
GGG
[ENA]
¢þ
>WENV170654608
JRYL01001975
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
112
188
+
Pro
GGG
[ENA]
¢þ
>WENV170727278
LTCX01011592
[LTCX] gut metagenome; intestine contents (feces)
49
125
+
Pro
GGG
[ENA]
¢þ
>C181021827
CP016878
Gammaproteobacteria
Xanthomonas hortorum B07-007 [CP016878]
1586513
1586437
-
Pro
GGG
-
¡û
>C181080839
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
2817365
2817289
-
Pro
GGG
-
¡û
>C191165691
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
2212514
2212438
-
Pro
GGG
-
¡û
>W1910692363
MDCB01000011
Gammaproteobacteria
Xanthomonas albilineans CFBP2523 [MDCB]
130771
130695
-
Pro
GGG
[ENA]
¡û
>W1910693013
MDEE01000023
Gammaproteobacteria
Xanthomonas dyei CFBP7245 [MDEE]
59559
59483
-
Pro
GGG
[ENA]
¡û
>W1910693070
MDEF01000082
Gammaproteobacteria
Xanthomonas hortorum pv. hederae CFBP4925 [MDEF]
8315
8391
+
Pro
GGG
[ENA]
¡û
>W1910693239
MDEJ01000001
Gammaproteobacteria
Xanthomonas populi CFBP1817 [MDEJ]
56665
56589
-
Pro
GGG
[ENA]
¡û
>W1910693530
MDFM01000022
Gammaproteobacteria
Xanthomonas hortorum CFBP4188 [MDFM]
76942
76866
-
Pro
GGG
[ENA]
¡û
>W1911162528
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
366295
366371
+
Pro
GGG
[ENA]
¡û
>W1911218351
NRQR01000013
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
138883
138807
-
Pro
GGG
[ENA]
¡û
>W1911283839
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
248864
248788
-
Pro
GGG
[ENA]
¡û
>W1911405457
NWQQ01000020
Gammaproteobacteria
Xanthomonadaceae bacterium NML95-0200 [NWQQ]
107294
107370
+
Pro
GGG
[ENA]
¡û
>W1911543561
ORZC01000203
Gammaproteobacteria
Xanthomonas fragariae JVD-0051 [ORZC]
11559
11483
-
Pro
GGG
[ENA]
¡û
>W1911543934
ORZJ01000150
Gammaproteobacteria
Xanthomonas fragariae PD 2905 [ORZJ]
17739
17663
-
Pro
GGG
[ENA]
¡û
>W1911544737
ORZZ01000162
Gammaproteobacteria
Xanthomonas fragariae XF 61 [ORZZ]
17738
17662
-
Pro
GGG
[ENA]
¡û
>W1810195874
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
2085510
2085586
+
Pro
GGG
[ENA]
¡û
>W1810331527
PUPT01000007
Gammaproteobacteria
Xanthomonas arboricola PLY_9 [PUPT]
596379
596303
-
Pro
GGG
[ENA]
¡û
>W1810331561
PUPU01000002
Gammaproteobacteria
Xanthomonas arboricola PLY_4 [PUPU]
2602524
2602448
-
Pro
GGG
[ENA]
¡û
>W1810331618
PUPV01000002
Gammaproteobacteria
Xanthomonas arboricola PLY_3 [PUPV]
3262687
3262611
-
Pro
GGG
[ENA]
¡û
>W1810331691
PUPW01000004
Gammaproteobacteria
Xanthomonas arboricola FOR_F26 [PUPW]
863513
863437
-
Pro
GGG
[ENA]
¡û
>W1810331745
PUPX01000002
Gammaproteobacteria
Xanthomonas arboricola FOR_F23 [PUPX]
867766
867690
-
Pro
GGG
[ENA]
¡û
>W1810331798
PUPY01000004
Gammaproteobacteria
Xanthomonas arboricola FOR_F21 [PUPY]
865306
865230
-
Pro
GGG
[ENA]
¡û
>W1810331857
PUPZ01000004
Gammaproteobacteria
Xanthomonas arboricola FOR_F20 [PUPZ]
388438
388362
-
Pro
GGG
[ENA]
¡û
>W1810403302
PYJG01000089
Gammaproteobacteria
Xanthomonas hortorum pv. hederae WHRI 7744 [PYJG]
15258
15182
-
Pro
GGG
[ENA]
¡û
>W1810692809
QLKV01000011
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
101599
101675
+
Pro
GGG
[ENA]
¡û
>W1810788827
QRER01000008
Gammaproteobacteria
Xanthomonas arboricola MEU_M1 [QRER]
160560
160484
-
Pro
GGG
[ENA]
¡û
>W1810788929
QRET01000002
Gammaproteobacteria
Xanthomonas dyei PLY_2 [QRET]
3370274
3370198
-
Pro
GGG
[ENA]
¡û
>W1810788984
QREU01000003
Gammaproteobacteria
Xanthomonas dyei PLY_1 [QREU]
838058
837982
-
Pro
GGG
[ENA]
¡û
>W1810914457
QVPD01000001
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
115649
115573
-
Pro
GGG
[ENA]
¡û
>C10114096
FP565176
Gammaproteobacteria
Xanthomonas albilineans GPE PC73 [FP565176]
1268182
1268258
+
Pro
GGG
[Ensembl]
¡û
>W1511542325
JZHX01000001
Gammaproteobacteria
Xanthomonas albilineans FIJ080 [JZHX]
1228033
1228109
+
Pro
GGG
[ENA]
¡û
>W1511542375
JZHY01000003
Gammaproteobacteria
Xanthomonas albilineans GAB266 [JZHY]
1209394
1209470
+
Pro
GGG
[ENA]
¡û
>W1511542425
JZHZ01000007
Gammaproteobacteria
Xanthomonas sp. GPE 39 [JZHZ]
1196220
1196296
+
Pro
GGG
[ENA]
¡û
>W1511542474
JZIA01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC17 [JZIA]
1228100
1228176
+
Pro
GGG
[ENA]
¡û
>W1511542524
JZIB01000003
Gammaproteobacteria
Xanthomonas albilineans GPE PC86 [JZIB]
1262506
1262582
+
Pro
GGG
[ENA]
¡û
>W1511542574
JZIC01000001
Gammaproteobacteria
Xanthomonas albilineans HVO082 [JZIC]
1225670
1225746
+
Pro
GGG
[ENA]
¡û
>W1511542624
JZID01000001
Gammaproteobacteria
Xanthomonas albilineans HVO005 [JZID]
1212917
1212993
+
Pro
GGG
[ENA]
¡û
>W1511542673
JZIE01000001
Gammaproteobacteria
Xanthomonas albilineans LKA070 [JZIE]
1205127
1205203
+
Pro
GGG
[ENA]
¡û
>W1511542722
JZIF01000003
Gammaproteobacteria
Xanthomonas albilineans MTQ032 [JZIF]
1231714
1231790
+
Pro
GGG
[ENA]
¡û
>W1511542820
JZIH01000029
Gammaproteobacteria
Xanthomonas albilineans REU174 [JZIH]
1323081
1323157
+
Pro
GGG
[ENA]
¡û
>W1511542881
JZII01000001
Gammaproteobacteria
Xanthomonas albilineans REU209 [JZII]
2330710
2330634
-
Pro
GGG
[ENA]
¡û
>W1511542919
JZIJ01000005
Gammaproteobacteria
Xanthomonas albilineans USA048 [JZIJ]
1168698
1168774
+
Pro
GGG
[ENA]
¡û
>W1511542969
JZIK01000001
Gammaproteobacteria
Xanthomonas albilineans Xa23R1 [JZIK]
1162467
1162543
+
Pro
GGG
[ENA]
¡û
>W1511543019
JZIL01000006
Gammaproteobacteria
Xanthomonas albilineans XaFL07-1 [JZIL]
1227408
1227484
+
Pro
GGG
[ENA]
¡û
>W1511543065
JZIM01000007
Gammaproteobacteria
Xanthomonas sp. MUS 060 [JZIM]
123933
123857
-
Pro
GGG
[ENA]
¡û
>W1511544545
JZJR01000103
Gammaproteobacteria
Xanthomonas hortorum SM194-10 [JZJR]
8332
8408
+
Pro
GGG
[ENA]
¡û
>W1511544591
JZJS01000095
Gammaproteobacteria
Xanthomonas hortorum SM177-10 [JZJS]
22398
22322
-
Pro
GGG
[ENA]
¡û
>W1511544606
JZJT01000015
Gammaproteobacteria
Xanthomonas hortorum SM182-10 [JZJT]
8196
8272
+
Pro
GGG
[ENA]
¡û
>W1511544696
JZJU01000151
Gammaproteobacteria
Xanthomonas hortorum SM220-10 [JZJU]
22430
22354
-
Pro
GGG
[ENA]
¡û
>W1511544722
JZJV01000052
Gammaproteobacteria
Xanthomonas hortorum SM234-10 [JZJV]
8194
8270
+
Pro
GGG
[ENA]
¡û
>W1511544770
JZJW01000118
Gammaproteobacteria
Xanthomonas hortorum SM406-11 [JZJW]
8189
8265
+
Pro
GGG
[ENA]
¡û
>W1511544815
JZJX01000024
Gammaproteobacteria
Xanthomonas hortorum SM413-11 [JZJX]
7533
7609
+
Pro
GGG
[ENA]
¡û
>W1511544885
JZJY01000072
Gammaproteobacteria
Xanthomonas hortorum SM605-11 [JZJY]
34007
33931
-
Pro
GGG
[ENA]
¡û
>W1511544921
JZJZ01000042
Gammaproteobacteria
Xanthomonas hortorum SM775-12 [JZJZ]
8740
8816
+
Pro
GGG
[ENA]
¡û
>W1511544997
JZKA01000152
Gammaproteobacteria
Xanthomonas hortorum SM795-12 [JZKA]
8736
8812
+
Pro
GGG
[ENA]
¡û
>W11144642
AEQX01000073
Gammaproteobacteria
Xanthomonas hortorum ATCC 19865 [AEQX]
23138
23062
-
Pro
GGG
[ENA]
¡û
>W121110735
ALIP01000101
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
24542
24466
-
Pro
GGG
[ENA]
¡û
>W1610675837
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1610728116
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>W1610737622
LMOG01000018
Gammaproteobacteria
Xanthomonas sp. Leaf131 [LMOG]
24942
25018
+
Pro
GGG
[ENA]
¡û
>W1610738061
LMOP01000010
Gammaproteobacteria
Xanthomonas sp. Leaf148 [LMOP]
29227
29303
+
Pro
GGG
[ENA]
¡û
>WENV077723
AAFX01093916
Soil microbial communities from Minnesota Farm
500
422
-
Pro
GGG
[ENA]
>W1710527408
FNKZ01000002
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
502180
502104
-
Pro
GGG
[ENA]
¡û
>W1710579415
FPCI01000002
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
806560
806636
+
Pro
GGG
[ENA]
¡û
>W1710582998
FQUK01000039
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
8296
8372
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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