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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159404 (67 seq.)
>W1710862595
LMEM01000014
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
34337
34413
+
His
GTG
[ENA]
¡û
>W1711179460
LWHQ01000129
Alphaproteobacteria
Methylobacterium platani [LWHQ]
730
654
-
His
GTG
[ENA]
¡û
>W131163784
ARAA01000039
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
20154
20078
-
His
GTG
[ENA]
¡û
>W131186330
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
1503934
1503858
-
His
GTG
[ENA]
¡û
>W131218805
ATYA01000004
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
118024
118100
+
His
GTG
[ENA]
¡û
>w026476
ABAY01000083
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
15509
15585
+
His
GTG
[ENA]
¡û
>WENV180014476
FQKF010022601
[FQKF] soil metagenome; Soil
358
282
-
His
GTG
[ENA]
¢þ
>WENV180309060
OBJR01479003
[OBJR] soil metagenome; soil
87
11
-
His
GTG
[ENA]
¢þ
>W08006153
ABIP01000017
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
69499
69426
-
His
GTG
[ENA]
¡û
>W08008863
ABLP01000019
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
45303
45379
+
His
GTG
[ENA]
¡û
>C08001621
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
759445
759372
-
His
GTG
[Ensembl]
¡û
>WENV183741739
PJUG01004877
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
310
234
-
His
GTG
[ENA]
¢þ
>WENV170003302
AGTN01292716
[AGTN] bioreactor metagenome; poplar biomass
319
243
-
His
GTG
[ENA]
¢þ
>WENV170011034
APMI01040610
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
889
813
-
His
GTG
[ENA]
¢þ
>WENV170012019
APMI01111708
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
690
766
+
His
GTG
[ENA]
¢þ
>WENV170012375
APMI01164286
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
608
684
+
His
GTG
[ENA]
¢þ
>WENV170014647
AYSL01002341
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
241
165
-
His
GTG
[ENA]
¢þ
>WENV170553120
CXWK01008356
[CXWK] wastewater metagenome; activated sludge
6108
6184
+
His
GTG
[ENA]
¢þ
>WENV170634797
JAHE01078631
[JAHE] sediment metagenome; lake sediment
424
348
-
His
GTG
[ENA]
¢þ
>WENV170651512
JRYF01042093
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
201
125
-
His
GTG
[ENA]
¢þ
>WENV170713532
LNFM01034000
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2791
2867
+
His
GTG
[ENA]
¢þ
>WENV170974414
MTKY01060625
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1140
1216
+
His
GTG
[ENA]
¢þ
>WENV170974506
MTKY01063861
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
292
216
-
His
GTG
[ENA]
¢þ
>WENV170978709
MTKZ01058764
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
248
324
+
His
GTG
[ENA]
¢þ
>C181139159
CP026747
Alphaproteobacteria
Devosia sp. I507 [CP026747]
711441
711365
-
His
GTG
-
¡û
>C181180111
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
4249329
4249405
+
His
GTG
-
¡û
>C181180211
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
6062807
6062883
+
His
GTG
-
¡û
>C191028881
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
2804855
2804779
-
His
GTG
-
¡û
>C191029934
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
2185645
2185569
-
His
GTG
-
¡û
>C191131989
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2026958
2026882
-
His
GTG
-
¡û
>C191152062
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
469675
469751
+
His
GTG
-
¡û
>C191220325
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
1647943
1648019
+
His
GTG
-
¡û
>C191221080
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
2730304
2730228
-
His
GTG
-
¡û
>W141815703
JQJH01000004
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
157486
157410
-
His
GTG
[ENA]
¡û
>W141817273
JQKO01000002
Alphaproteobacteria
Methylocapsa aurea [JQKO]
146928
147004
+
His
GTG
[ENA]
¡û
>C09107863
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
5903692
5903616
-
His
GTG
[Ensembl]
¡û
>C09107908
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
3814417
3814341
-
His
GTG
[Ensembl]
¡û
>W1910914018
NHSJ01000121
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
50479
50555
+
His
GTG
[ENA]
¡û
>W1911708574
QOWC01000153
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
16596
16520
-
His
GTG
[ENA]
¡û
>W1911788038
QYBC01000015
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
20671
20595
-
His
GTG
[ENA]
¡û
>W1810068776
PDZR01000001
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
246497
246421
-
His
GTG
[ENA]
¡û
>W1810079894
PELK01001476
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
1372
1296
-
His
GTG
[ENA]
¡û
>W1810543594
QDKM01000002
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
310830
310754
-
His
GTG
[ENA]
¡û
>W1810720649
QNRK01000001
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
96850
96926
+
His
GTG
[ENA]
¡û
>W1810884367
QUMO01000003
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
415334
415410
+
His
GTG
[ENA]
¡û
>W1810887335
QUOY01000002
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
185768
185844
+
His
GTG
[ENA]
¡û
>C11117044
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2474252
2474328
+
His
GTG
[Ensembl]
¡û
>W1511400980
JTHG01000385
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
2822
2746
-
His
GTG
[ENA]
¡û
>W1511507875
JXOD01000065
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
8625
8549
-
His
GTG
[ENA]
¡û
>W1511526773
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
630831
630907
+
His
GTG
[ENA]
¡û
>W1511563272
LABX01000292
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
8681
8605
-
His
GTG
[ENA]
¡û
>W1511563309
LABY01000112
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
3088
3164
+
His
GTG
[ENA]
¡û
>W1511563371
LABZ01000140
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
3024
3100
+
His
GTG
[ENA]
¡û
>C161001195
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
663901
663825
-
His
GTG
[Ensembl]
¡û
>W1610049846
BBFH01000755
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1350
1274
-
His
GTG
[ENA]
¡û
>W1610590429
LDRL01000055
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3441
3517
+
His
GTG
[ENA]
¡û
>W1610590531
LDRM01000259
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
9876
9800
-
His
GTG
[ENA]
¡û
>W1610590594
LDRN01000219
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
2853
2929
+
His
GTG
[ENA]
¡û
>W1610724941
LMEM01000014
Alphaproteobacteria
Devosia sp. Root436 [LMEM]
34337
34413
+
His
GTG
[ENA]
¡û
>W1610987361
LWHQ01000129
Alphaproteobacteria
Methylobacterium platani [LWHQ]
730
654
-
His
GTG
[ENA]
¡û
>W1710046245
BBFH01000755
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1350
1274
-
His
GTG
[ENA]
¡û
>W1710548790
FOEB01000001
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
444041
444117
+
His
GTG
[ENA]
¡û
>W1710567189
FOSN01000015
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
54222
54298
+
His
GTG
[ENA]
¡û
>W1710579057
FPCB01000021
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
136499
136575
+
His
GTG
[ENA]
¡û
>W1710709709
LDRL01000055
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
3441
3517
+
His
GTG
[ENA]
¡û
>W1710709811
LDRM01000259
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
9876
9800
-
His
GTG
[ENA]
¡û
>W1710709874
LDRN01000219
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
2853
2929
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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