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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159425 (45 seq.)
>W1710878185
LMQT01000001
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
789044
788968
-
Pro
CGG
[ENA]
¡û
>W1710878330
LMQW01000004
Alphaproteobacteria
Aureimonas sp. Leaf427 [LMQW]
66829
66905
+
Pro
CGG
[ENA]
¡û
>W1710878448
LMQY01000073
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
66789
66865
+
Pro
CGG
[ENA]
¡û
>W131046311
AMSI01000016
Alphaproteobacteria
Nitratireductor indicus C115 [AMSI]
10041
9965
-
Pro
CGG
[ENA]
¡û
>W141278837
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
1305199
1305123
-
Pro
CGG
[ENA]
¡û
>WENV170963717
MRWG01000585
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
7679
7603
-
Pro
CGG
[ENA]
¡û
>W1910006620
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
232668
232744
+
Pro
CGG
[ENA]
¡û
>W1910341116
FTPD01000021
Alphaproteobacteria
Mesorhizobium prunaredense [FTPD]
565
489
-
Pro
TGG
[ENA]
¡û
>W1911156026
NPKH01000033
Alphaproteobacteria
Mesorhizobium sp. WYCCWR 10195 [NPKH]
1351
1275
-
Pro
TGG
[ENA]
¡û
>W1911156102
NPKJ01000028
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
42108
42184
+
Pro
TGG
[ENA]
¡û
>W1911765959
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
1177389
1177465
+
Pro
CGG
[ENA]
¡û
>W1810626003
QHKP01000005
Alphaproteobacteria
Notoacmeibacter marinus HMA008 [QHKP]
116728
116652
-
Pro
CGG
[ENA]
¡û
>SRA1015058
SRR023845.443746
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
31
107
+
Pro
CGG
[SRA]
>W2010074978
BAUX01000006
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
232668
232744
+
Pro
CGG
[ENA]
¡û
>W2011025468
NPKH01000033
Alphaproteobacteria
Mesorhizobium sp. WYCCWR 10195 [NPKH]
1351
1275
-
Pro
TGG
[ENA]
¡û
>W2011025544
NPKJ01000028
Alphaproteobacteria
Mesorhizobium temperatum SDW018 [NPKJ]
42108
42184
+
Pro
TGG
[ENA]
¡û
>W2011324402
QXDF01000001
Alphaproteobacteria
Dichotomicrobium thermohalophilum DSM 5002 [QXDF]
1177389
1177465
+
Pro
CGG
[ENA]
¡û
>W2011404302
RCWN01000001
Alphaproteobacteria
Notoacmeibacter sp. M2BS9Y-3-1 [RCWN]
851398
851322
-
Pro
CGG
[ENA]
¡û
>W2012425526
WQNH01000088
Alphaproteobacteria
Chelativorans sp. lm93 [WQNH]
3980
4056
+
Pro
CGG
[ENA]
¡û
>W2110031358
BMMF01000007
Alphaproteobacteria
Salinarimonas ramus CGMCC 1.9161 [BMMF]
259751
259675
-
Pro
CGG
[ENA]
¡û
>W2110309552
JADDXW010000005
Alphaproteobacteria
Aurantimonas sp. SW136 [JADDXW]
119107
119183
+
Pro
CGG
[ENA]
¡û
>W2110507707
JAFKDA010000007
Alphaproteobacteria
Nitratireductor aquimarinus TN21-2 [JAFKDA]
201924
201848
-
Pro
CGG
[ENA]
¡û
>W2110507847
JAFKDD010000006
Alphaproteobacteria
Nitratireductor pacificus TN28-1 [JAFKDD]
201924
201848
-
Pro
CGG
[ENA]
¡û
>W2110556277
JAGIYY010000002
Alphaproteobacteria
Tianweitania sediminis Z8 [JAGIYY]
472743
472819
+
Pro
CGG
[ENA]
¡û
>W2110642035
JAHSQO010000005
Alphaproteobacteria
Nitratireductor sp. R6 [JAHSQO]
154432
154508
+
Pro
CGG
[ENA]
¡û
>W2110642075
JAHSSF010000002
Alphaproteobacteria
Nitratireductor sp. L1-7-SE [JAHSSF]
981302
981226
-
Pro
CGG
[ENA]
¡û
>W2110653256
JAHVIV010000006
Alphaproteobacteria
Nitratireductor aquimarinus TN21-4 [JAHVIV]
201924
201848
-
Pro
CGG
[ENA]
¡û
>C211158636
CP062167
Alphaproteobacteria
Aureimonas sp. OT7 [CP062167]
3541262
3541338
+
Pro
CGG
-
¡û
>C211310750
CP072611
Alphaproteobacteria
Aureimonas populi KCTC 42087 [CP072611]
3227186
3227110
-
Pro
CGG
-
¡û
>W2110740449
JHQU01000342
Alphaproteobacteria
Mesorhizobium mediterraneum CCBAU 01399 [JHQU]
1285
1209
-
Pro
TGG
[ENA]
¡û
>C231260347
CP089311
Alphaproteobacteria
Aureimonas altamirensis C2P003 [CP089311]
3923496
3923572
+
Pro
CGG
-
¡û
>C231269667
CP090066
Alphaproteobacteria
Aurantimonas sp. HBX-1 [CP090066]
3133638
3133562
-
Pro
CGG
-
¡û
>C231352146
CP094828
Alphaproteobacteria
Acuticoccus sp. I52.16.1 [CP094828]
4835998
4836074
+
Pro
CGG
-
¡û
>C231554988
CP114029
Alphaproteobacteria
Jiella sp. HL-NP1 [CP114029]
4802300
4802376
+
Pro
CGG
-
¡û
>W1511344077
JRFJ01000002
Alphaproteobacteria
Aureimonas altamirensis ON-56566 [JRFJ]
222717
222641
-
Pro
CGG
[ENA]
¡û
>W121071495
AJXZ01000037
Alphaproteobacteria
Nitratireductor aquibiodomus RA22 [AJXZ]
14831
14907
+
Pro
CGG
[ENA]
¡û
>W1610056775
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
84312
84236
-
Pro
CGG
[ENA]
¡û
>W1610056858
BBWP01000021
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
36199
36123
-
Pro
CGG
[ENA]
¡û
>W1610056888
BBWQ01000001
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
197521
197445
-
Pro
CGG
[ENA]
¡û
>W1610740794
LMQY01000073
Alphaproteobacteria
Aureimonas sp. Leaf460 [LMQY]
66789
66865
+
Pro
CGG
[ENA]
¡û
>W1710053474
BBWN01000025
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
84312
84236
-
Pro
CGG
[ENA]
¡û
>W1710053557
BBWP01000021
Alphaproteobacteria
Aurantimonas manganoxydans [BBWP]
36199
36123
-
Pro
CGG
[ENA]
¡û
>W1710053587
BBWQ01000001
Alphaproteobacteria
Aureimonas altamirensis [BBWQ]
197521
197445
-
Pro
CGG
[ENA]
¡û
>W1710508118
FMVW01000001
Alphaproteobacteria
Afifella marina DSM 2698 [FMVW]
544415
544339
-
Pro
CGG
[ENA]
¡û
>W1710535303
FNSL01000001
Alphaproteobacteria
Nitratireductor aquibiodomus ES.061 [FNSL]
3819433
3819357
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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