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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159427 (23 seq.)
>W1711270783
LZEM01000022
Actinomycetota
Microbacterium arborescens [LZEM]
17781
17707
-
Val
TAC
[ENA]
¡û
>C171073397
CP018134
Actinomycetota
Microbacterium paludicola CC3 [CP018134]
988590
988516
-
Val
TAC
-
¡û
>W141230030
BASQ01000001
Actinomycetota
Microbacterium sp. TS-1 [BASQ]
678763
678689
-
Val
TAC
[ENA]
¡û
>C191056025
CP027929
Actinomycetota
Microbacterium sp. SGAir0570 [CP027929]
1347196
1347270
+
Val
TAC
-
¡û
>W1910913713
NHRF01000004
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
158068
157994
-
Val
TAC
[ENA]
¡û
>W1911159677
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
689566
689492
-
Val
TAC
[ENA]
¡û
>W1810262639
PQSV01000001
Actinomycetota
Microbacterium sp. Ru50 [PQSV]
679668
679594
-
Val
TAC
[ENA]
¡û
>W1810698866
QMBN01000001
Actinomycetota
Microbacterium sp. SMR1 [QMBN]
387870
387944
+
Val
TAC
[ENA]
¡û
>W1810722509
QNUV01000041
Actinomycetota
Microbacterium arborescens DSM 20754 [QNUV]
415122
415196
+
Val
TAC
[ENA]
¡û
>W1810722544
QNUW01000008
Actinomycetota
Microbacterium arborescens RCB1 [QNUW]
199770
199696
-
Val
TAC
[ENA]
¡û
>W2010966734
NHRF01000004
Actinomycetota
Microbacterium sp. AISO3 [NHRF]
158068
157994
-
Val
TAC
[ENA]
¡û
>W2011026614
NPMR01000002
Actinomycetota
Microbacterium sp. Yaish 1 [NPMR]
689566
689492
-
Val
TAC
[ENA]
¡û
>W2011355036
RAQC01000001
Actinomycetota
Microbacterium sp. AG238 [RAQC]
675376
675302
-
Val
TAC
[ENA]
¡û
>W2011538014
SCMR01000002
Actinomycetota
Microbacterium sp. 2FI [SCMR]
124421
124497
+
Val
TAC
[ENA]
¡û
>W2012208773
VYRZ01000002
Actinomycetota
Microbacterium radiodurans DSM 25564 [VYRZ]
647185
647111
-
Val
TAC
[ENA]
¡û
>W2110554053
JAGIOK010000001
Actinomycetota
Microbacterium imperiale DSM 20530 [JAGIOK]
681018
680944
-
Val
TAC
[ENA]
¡û
>W2110574500
JAGTTN010000002
Actinomycetota
Microbacterium sp. BWT-G7 [JAGTTN]
440861
440786
-
Val
TAC
[ENA]
¡û
>C201295898
CP058316
Actinomycetota
Microbacterium oleivorans I46 [CP058316]
3148030
3148104
+
Val
TAC
-
¡û
>C231027549
AP027141
Actinomycetota
Microbacterium terricola KV-448 [AP027141]
1435362
1435287
-
Val
TAC
-
¡û
>C231510975
CP107222
Actinomycetota
Microbacterium terricola JCM 14903 [CP107222]
1627699
1627774
+
Val
TAC
-
¡û
>W2310022053
BSEO01000001
Actinomycetota
Microbacterium imperiale VKM Ac-1447 [BSEO]
554605
554679
+
Val
TAC
[ENA]
¡û
>W1611030347
LZEM01000022
Actinomycetota
Microbacterium arborescens [LZEM]
17781
17707
-
Val
TAC
[ENA]
¡û
>W1710526734
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
718902
718828
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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