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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159454 (98 seq.)
>W1710860357
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
515034
514958
-
Met
CAT
[ENA]
¡û
>W1710869882
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
996404
996328
-
Met
CAT
[ENA]
¡û
>W1710871342
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
334342
334418
+
Met
CAT
[ENA]
¡û
>W1710872720
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
337880
337956
+
Met
CAT
[ENA]
¡û
>W1710872936
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
356166
356092
-
Met
CAT
[ENA]
¡û
>W1710876886
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
1034773
1034697
-
Met
CAT
[ENA]
¡û
>W1710878101
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
337748
337824
+
Met
CAT
[ENA]
¡û
>W131227866
AUFN01000001
Actinomycetota
Nocardioides alkalitolerans DSM 16699 [AUFN]
42206
42132
-
Met
CAT
[ENA]
¡û
>W1711461090
MJGM01000034
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
117078
117004
-
Met
CAT
[ENA]
¡û
>W1711461345
MJGS01000002
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
286000
286076
+
Met
CAT
[ENA]
¡û
>W1711461414
MJGT01000105
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
52713
52787
+
Met
CAT
[ENA]
¡û
>W1711461581
MJGX01000069
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
35111
35185
+
Met
CAT
[ENA]
¡û
>W131155958
AQOZ01000026
Actinomycetota
Nocardioides sp. Iso805N [AQOZ]
298680
298604
-
Met
CAT
[ENA]
¡û
>W131216931
ATWH01000004
Actinomycetota
Glaciibacter superstes DSM 21135 [ATWH]
293230
293156
-
Met
CAT
[ENA]
¡û
>W131219668
ATYT01000002
Actinomycetota
Thermocrispum municipale DSM 44069 [ATYT]
11299
11373
+
Met
CAT
[ENA]
¡û
>W131219890
ATYX01000010
Actinomycetota
Thermocrispum agreste DSM 44070 [ATYX]
131888
131814
-
Met
CAT
[ENA]
¡û
>W131224331
AUCS01000002
Actinomycetota
Dermatophilus congolensis DSM 44180 = NBRC 105199 [AUCS]
481606
481530
-
Met
CAT
[ENA]
¡û
>WENV180016186
FSUF01000096
[FSUF] metagenome; soil
1624
1698
+
Met
CAT
[ENA]
¢þ
>WENV180017363
FSWU01000153
[FSWU] metagenome; soil
1137
1211
+
Met
CAT
[ENA]
¢þ
>WENV180029004
FTJI01002243
[FTJI] metagenome; soil
5361
5287
-
Met
CAT
[ENA]
¢þ
>WENV180034528
FTKR01002249
[FTKR] metagenome; soil
5361
5287
-
Met
CAT
[ENA]
¢þ
>WENV180110631
OAPN01001579
[OAPN] marine metagenome; 2011
513
437
-
Met
CAT
[ENA]
¢þ
>WENV181232809
OFEP01112530
[OFEP] coral metagenome; NA
479
553
+
Met
CAT
[ENA]
¢þ
>WENV181368490
OFQL01009846
[OFQL] freshwater metagenome; Freshwater Lake
218
294
+
Met
CAT
[ENA]
¢þ
>WENV183092681
OLLI01001345
[OLLI] soil metagenome; soil
335
261
-
Met
CAT
[ENA]
¢þ
>WENV183690807
ORMF011653845
[ORMF] groundwater metagenome; groundwater
506
430
-
Met
CAT
[ENA]
¢þ
>WENV183697891
OUNK010266597
[OUNK] metagenome; soil
503
577
+
Met
CAT
[ENA]
¢þ
>WENV170011694
APMI01082583
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1227
1303
+
Met
CAT
[ENA]
¢þ
>C181119576
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
3191911
3191837
-
Met
CAT
-
¡û
>C181200535
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2237826
2237752
-
Met
CAT
-
¡û
>C181225157
LT906453
Actinomycetota
Dermatophilus congolensis NCTC13039 [LT906453]
2328887
2328813
-
Met
CAT
-
¡û
>C191159925
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
3096038
3095964
-
Met
CAT
-
¡û
>C191182485
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
3074469
3074395
-
Met
CAT
-
¡û
>C191186690
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
4029467
4029541
+
Met
CAT
-
¡û
>W141773328
JOIJ01000010
Actinomycetota
Prauserella rugosa [JOIJ]
206541
206467
-
Met
CAT
[ENA]
¡û
>W1911426043
NXIA01000002
Actinomycetota
Curtobacterium sp. 'Ferrero' [NXIA]
166011
166085
+
Met
CAT
[ENA]
¡û
>W1911681904
QKLA01000011
Actinomycetota
Curtobacterium sp. MCPF17_050 [QKLA]
82846
82922
+
Met
CAT
[ENA]
¡û
>W1911681940
QKLB01000004
Actinomycetota
Curtobacterium sp. MCPF17_046 [QKLB]
48782
48858
+
Met
CAT
[ENA]
¡û
>W1911682026
QKLD01000002
Actinomycetota
Curtobacterium sp. MCPF17_015 [QKLD]
217757
217833
+
Met
CAT
[ENA]
¡û
>W1911682077
QKLI01000002
Actinomycetota
Curtobacterium sp. MCBD17_030 [QKLI]
126069
126144
+
Met
CAT
[ENA]
¡û
>W1911682129
QKLJ01000003
Actinomycetota
Curtobacterium sp. MCBD17_023 [QKLJ]
233681
233605
-
Met
CAT
[ENA]
¡û
>W1911682171
QKLK01000003
Actinomycetota
Curtobacterium sp. MCBD17_029 [QKLK]
232620
232544
-
Met
CAT
[ENA]
¡û
>W1911685035
QKSD01000009
Actinomycetota
Curtobacterium sp. MCPF17_052 [QKSD]
162124
162049
-
Met
CAT
[ENA]
¡û
>W1911685120
QKSF01000004
Actinomycetota
Curtobacterium sp. MCPF17_047 [QKSF]
195291
195216
-
Met
CAT
[ENA]
¡û
>W1911685175
QKSG01000006
Actinomycetota
Curtobacterium sp. MCPF17_031 [QKSG]
26762
26837
+
Met
CAT
[ENA]
¡û
>W1911685264
QKSI01000013
Actinomycetota
Curtobacterium sp. MCPF17_002 [QKSI]
51895
51970
+
Met
CAT
[ENA]
¡û
>W1911685356
QKSK01000005
Actinomycetota
Curtobacterium sp. MCPF17_011 [QKSK]
193548
193473
-
Met
CAT
[ENA]
¡û
>W1911685400
QKSL01000007
Actinomycetota
Curtobacterium sp. MCPF17_001 [QKSL]
142818
142743
-
Met
CAT
[ENA]
¡û
>W1911685426
QKTK01000001
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
156379
156303
-
Met
CAT
[ENA]
¡û
>W1911685529
QKTL01000015
Actinomycetota
Curtobacterium sp. MCBD17_040 [QKTL]
66634
66559
-
Met
CAT
[ENA]
¡û
>W1911685550
QKTM01000002
Actinomycetota
Curtobacterium sp. MCBD17_035 [QKTM]
57960
58035
+
Met
CAT
[ENA]
¡û
>W1911685610
QKTN01000005
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
240807
240732
-
Met
CAT
[ENA]
¡û
>W1911685642
QKTO01000003
Actinomycetota
Curtobacterium sp. MCBD17_032 [QKTO]
228708
228632
-
Met
CAT
[ENA]
¡û
>W1911685678
QKTP01000001
Actinomycetota
Curtobacterium sp. MCBD17_003 [QKTP]
270969
271044
+
Met
CAT
[ENA]
¡û
>W1911685739
QKTQ01000005
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
192167
192092
-
Met
CAT
[ENA]
¡û
>W1911685825
QKTS01000003
Actinomycetota
Curtobacterium sp. MCBD17_021 [QKTS]
227245
227170
-
Met
CAT
[ENA]
¡û
>W1911685890
QKTT01000011
Actinomycetota
Curtobacterium sp. MCBD17_019 [QKTT]
66578
66503
-
Met
CAT
[ENA]
¡û
>W1911685914
QKTU01000003
Actinomycetota
Curtobacterium sp. MCBD17_013 [QKTU]
58618
58693
+
Met
CAT
[ENA]
¡û
>W1911686078
QKVS01000004
Actinomycetota
Curtobacterium sp. MCBD17_031 [QKVS]
240807
240732
-
Met
CAT
[ENA]
¡û
>W1911783432
QXTG01000003
Actinomycetota
Amnibacterium setariae DD4a [QXTG]
29773
29699
-
Met
CAT
[ENA]
¡û
>W1810201567
POAG01000010
Actinomycetota
Nocardioides sp. 616 [POAG]
222564
222490
-
Met
CAT
[ENA]
¡û
>W1810626177
QHKX01000001
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
98186
98112
-
Met
CAT
[ENA]
¡û
>W1810626240
QHKY01000003
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
328496
328422
-
Met
CAT
[ENA]
¡û
>W1810626275
QHKZ01000003
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
339672
339598
-
Met
CAT
[ENA]
¡û
>W1810675529
QKLF01000004
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
217928
218004
+
Met
CAT
[ENA]
¡û
>W1810675563
QKLG01000003
Actinomycetota
Curtobacterium sp. MCJR17_043 [QKLG]
228912
228836
-
Met
CAT
[ENA]
¡û
>W1810681232
QKSR01000012
Actinomycetota
Curtobacterium sp. MCSS17_015 [QKSR]
15565
15490
-
Met
CAT
[ENA]
¡û
>W1810681614
QKTA01000001
Actinomycetota
Curtobacterium sp. MCLR17_051 [QKTA]
184671
184597
-
Met
CAT
[ENA]
¡û
>W1810681993
QKTI01000003
Actinomycetota
Curtobacterium sp. MCLR17_032 [QKTI]
201470
201395
-
Met
CAT
[ENA]
¡û
>W1810705028
QMIG01000037
Actinomycetota
Phytoactinopolyspora halophila YIM 96934 [QMIG]
38326
38252
-
Met
CAT
[ENA]
¡û
>W1810756441
QPFD01000002
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
13825
13751
-
Met
CAT
[ENA]
¡û
>W1510071710
CDGT01000022
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
163313
163387
+
Met
CAT
[ENA]
¡û
>W1511402099
JTJI01000001
Actinomycetota
Prauserella sp. Am3 [JTJI]
335286
335360
+
Met
CAT
[ENA]
¡û
>W1511509364
JXQZ01000002
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
56271
56195
-
Met
CAT
[ENA]
¡û
>W121124420
BAFE01000029
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
1788
1714
-
Met
CAT
[ENA]
¡û
>W121126442
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
369121
369195
+
Met
CAT
[ENA]
¡û
>W121126620
BAHD01000003
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
99827
99903
+
Met
CAT
[ENA]
¡û
>W1610049508
BBFA01000363
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
651
727
+
Met
CAT
[ENA]
¡û
>W1610062601
BCNQ01000192
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
5467
5391
-
Met
CAT
[ENA]
¡û
>W1610069876
BCSV01000005
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
117113
117189
+
Met
CAT
[ENA]
¡û
>W1610588272
LDQC01000052
Actinomycetota
Curtobacterium luteum [LDQC]
11156
11082
-
Met
CAT
[ENA]
¡û
>W1610620618
LHOZ01000070
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
53277
53353
+
Met
CAT
[ENA]
¡û
>W1610722703
LMCU01000001
Actinomycetota
Leifsonia sp. Root112D2 [LMCU]
515034
514958
-
Met
CAT
[ENA]
¡û
>W1610732228
LMKB01000005
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
996404
996328
-
Met
CAT
[ENA]
¡û
>W1610733688
LMLG01000001
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
334342
334418
+
Met
CAT
[ENA]
¡û
>W1610735066
LMMF01000001
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
337880
337956
+
Met
CAT
[ENA]
¡û
>W1610735282
LMMJ01000009
Actinomycetota
Curtobacterium sp. Leaf261 [LMMJ]
356166
356092
-
Met
CAT
[ENA]
¡û
>W1610739232
LMPQ01000001
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
1034773
1034697
-
Met
CAT
[ENA]
¡û
>W1610740447
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
337748
337824
+
Met
CAT
[ENA]
¡û
>W1710045907
BBFA01000363
Actinomycetota
Nocardioides sp. JCM 18998 [BBFA]
651
727
+
Met
CAT
[ENA]
¡û
>W1710050422
BBRL01000004
Actinomycetota
Demequina sp. NBRC 110055 [BBRL]
157317
157241
-
Met
CAT
[ENA]
¡û
>W1710060077
BCNQ01000192
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
5467
5391
-
Met
CAT
[ENA]
¡û
>W1710067249
BCSV01000005
Actinomycetota
Curtobacterium ammoniigenes NBRC 101786 [BCSV]
117113
117189
+
Met
CAT
[ENA]
¡û
>W1710526366
FNKG01000002
Actinomycetota
Curtobacterium sp. UNCCL20 [FNKG]
551032
551108
+
Met
CAT
[ENA]
¡û
>W1710555142
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
655858
655932
+
Met
CAT
[ENA]
¡û
>W1710572726
FOWW01000011
Actinomycetota
Amycolatopsis arida deserti [FOWW]
77605
77531
-
Met
CAT
[ENA]
¡û
>W1710707552
LDQC01000052
Actinomycetota
Curtobacterium luteum [LDQC]
11156
11082
-
Met
CAT
[ENA]
¡û
>W1710748312
LHOZ01000070
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
53277
53353
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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