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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159476 (87 seq.)
>W1710785197
LJHQ01000063
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
68229
68153
-
Arg
ACG
[ENA]
¡û
>W1710858009
LMAR01000010
Alphaproteobacteria
Bosea thiooxidans [LMAR]
80885
80809
-
Arg
ACG
[ENA]
¡û
>W1710869467
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
248117
248041
-
Arg
ACG
[ENA]
¡û
>W1710869625
LMJW01000011
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
298460
298384
-
Arg
ACG
[ENA]
¡û
>W1710879544
LMRT01000016
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
90983
90907
-
Arg
ACG
[ENA]
¡û
>W1710893349
LNER01000097
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
4733
4657
-
Arg
ACG
[ENA]
¡û
>W1710893520
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
8449
8525
+
Arg
ACG
[ENA]
¡û
>W1711072928
LSIB01000006
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
147835
147911
+
Arg
ACG
[ENA]
¡û
>W1711073129
LSIG01000101
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
27356
27432
+
Arg
ACG
[ENA]
¡û
>W1711073302
LSIK01000205
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711073808
LSIY01000063
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711074371
LSJL01000264
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711074508
LSJP01000207
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711074601
LSJR01000254
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711074727
LSJU01000656
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
5582
5506
-
Arg
ACG
[ENA]
¡û
>W1711074784
LSJV01000208
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711074839
LSJX01000034
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711075558
LSKN01000062
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1711262653
LYXZ01000018
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
229502
229426
-
Arg
ACG
[ENA]
¡û
>W1711385315
MEEB01000147
Alphaproteobacteria
Hyphomicrobium sp. SCN 65-11 [MEEB]
5062
4986
-
Arg
ACG
[ENA]
¡û
>W1711385456
MEEF01000134
Alphaproteobacteria
Mesorhizobium sp. SCN 65-20 [MEEF]
5099
5175
+
Arg
ACG
[ENA]
¡û
>W1711502405
MKSQ01000026
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
587391
587315
-
Arg
ACG
[ENA]
¡û
>C171049998
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
221959
221883
-
Arg
ACG
-
¡û
>C171057748
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
6330131
6330207
+
Arg
ACG
-
¡û
>WENV181188880
OEOE01443257
[OEOE] activated sludge metagenome; Activated Sludge
39
115
+
Arg
ACG
[ENA]
¢þ
>WENV181227004
OFDN01000906
[OFDN] hot springs metagenome; Water
19683
19607
-
Arg
ACG
[ENA]
¢þ
>WENV181381169
OFRE01036332
[OFRE] wastewater metagenome; Exp Tend NO 50WW
204
280
+
Arg
ACG
[ENA]
¢þ
>WENV181415142
OGCL01004689
[OGCL] hot springs metagenome; Hot spring water
1561
1637
+
Arg
ACG
[ENA]
¢þ
>WENV181415400
OGCL01009936
[OGCL] hot springs metagenome; Hot spring water
1842
1766
-
Arg
ACG
[ENA]
¢þ
>WENV170011987
APMI01108415
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1345
1269
-
Arg
ACG
[ENA]
¢þ
>WENV170552177
CXWJ01042905
[CXWJ] wastewater metagenome; activated sludge
286
210
-
Arg
ACG
[ENA]
¢þ
>WENV170552579
CXWK01000469
[CXWK] wastewater metagenome; activated sludge
131
55
-
Arg
ACG
[ENA]
¢þ
>WENV170577751
FSSH01000778
[FSSH] freshwater metagenome; drinking water
92365
92289
-
Arg
ACG
[ENA]
¢þ
>WENV170649814
JRYC01170959
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
342
266
-
Arg
ACG
[ENA]
¢þ
>WENV170680584
LFEF01000152
[LFEF] freshwater metagenome; waterbloom
5291
5215
-
Arg
ACG
[ENA]
¢þ
>WENV170709478
LNFM01000379
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8445
8521
+
Arg
ACG
[ENA]
¢þ
>WENV170710464
LNFM01001819
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6820
6896
+
Arg
ACG
[ENA]
¢þ
>WENV170713887
LNFM01045611
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2729
2653
-
Arg
ACG
[ENA]
¢þ
>WENV171003170
NNBT01002083
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
76678
76602
-
Arg
ACG
[ENA]
¢þ
>C181063226
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
683197
683121
-
Arg
ACG
-
¡û
>C191014025
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
4864139
4864063
-
Arg
ACG
-
¡û
>W141805292
JPKG01000019
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
58261
58185
-
Arg
ACG
[ENA]
¡û
>W141815809
JQJJ01000010
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
285392
285316
-
Arg
ACG
[ENA]
¡û
>W1910501717
FYAS01000016
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
88125
88201
+
Arg
ACG
[ENA]
¡û
>W1910635417
LNCQ01000032
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
161071
160995
-
Arg
ACG
[ENA]
¡û
>W1910840126
MZXT01000009
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
319884
319808
-
Arg
ACG
[ENA]
¡û
>W1910840164
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
319884
319808
-
Arg
ACG
[ENA]
¡û
>W1910847663
NBDP01000019
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
295228
295152
-
Arg
ACG
[ENA]
¡û
>W1911653516
QDFX01000007
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
75943
75867
-
Arg
ACG
[ENA]
¡û
>W1810252027
PQFZ01000023
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
28821
28745
-
Arg
ACG
[ENA]
¡û
>W1810325528
PUEJ01000014
Alphaproteobacteria
Labrys okinawensis RP1T [PUEJ]
62651
62575
-
Arg
ACG
[ENA]
¡û
>W1810463352
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2186290
2186366
+
Arg
ACG
[ENA]
¡û
>W1810676892
QKMI01000004
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
246618
246694
+
Arg
ACG
[ENA]
¡û
>W1810783326
QQTO01000037
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
485317
485241
-
Arg
ACG
[ENA]
¡û
>W1810783338
QQTP01000002
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
134292
134368
+
Arg
ACG
[ENA]
¡û
>W1810887341
QUOY01000004
Alphaproteobacteria
Methylovirgula sp. 4M-Z18 [QUOY]
23073
22997
-
Arg
ACG
[ENA]
¡û
>W1511353044
JROW01000929
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
302
378
+
Arg
ACG
[ENA]
¡û
>C161070679
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3054540
3054616
+
Arg
ACG
[Ensembl]
¡û
>W1610550644
JXTJ01000018
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
254284
254360
+
Arg
ACG
[ENA]
¡û
>W1610649003
LJHQ01000063
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
68229
68153
-
Arg
ACG
[ENA]
¡û
>W1610720355
LMAR01000010
Alphaproteobacteria
Bosea thiooxidans [LMAR]
80885
80809
-
Arg
ACG
[ENA]
¡û
>W1610731813
LMJT01000005
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
248117
248041
-
Arg
ACG
[ENA]
¡û
>W1610731971
LMJW01000011
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
298460
298384
-
Arg
ACG
[ENA]
¡û
>W1610741890
LMRT01000016
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
90983
90907
-
Arg
ACG
[ENA]
¡û
>W1610753615
LNER01000097
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
4733
4657
-
Arg
ACG
[ENA]
¡û
>W1610753786
LNEV01000012
Alphaproteobacteria
Rhizobiales bacterium Ga0077545 [LNEV]
8449
8525
+
Arg
ACG
[ENA]
¡û
>W1610912188
LSIB01000006
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
147835
147911
+
Arg
ACG
[ENA]
¡û
>W1610912434
LSIG01000101
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
27356
27432
+
Arg
ACG
[ENA]
¡û
>W1610912607
LSIK01000205
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610913113
LSIY01000063
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610913676
LSJL01000264
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610913813
LSJP01000207
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610913906
LSJR01000254
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610914032
LSJU01000656
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
5582
5506
-
Arg
ACG
[ENA]
¡û
>W1610914089
LSJV01000208
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610914144
LSJX01000034
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1610914863
LSKN01000062
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
27382
27458
+
Arg
ACG
[ENA]
¡û
>W1611024520
LYXZ01000018
Alphaproteobacteria
Labrys sp. WJW [LYXZ]
229502
229426
-
Arg
ACG
[ENA]
¡û
>W1710064178
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
2661815
2661891
+
Arg
ACG
[ENA]
¡û
>W1710515709
FNBZ01000007
Alphaproteobacteria
Bosea robiniae [FNBZ]
240866
240942
+
Arg
ACG
[ENA]
¡û
>W1710538953
FNUY01000004
Alphaproteobacteria
Bosea lathyri [FNUY]
122686
122610
-
Arg
ACG
[ENA]
¡û
>W1710544032
FOAN01000006
Alphaproteobacteria
Bosea lupini [FOAN]
514438
514514
+
Arg
ACG
[ENA]
¡û
>W1710557009
FOKP01000029
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
19018
19094
+
Arg
ACG
[ENA]
¡û
>W1710564906
FOQV01000002
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
913723
913799
+
Arg
ACG
[ENA]
¡û
>W1710596451
FTMO01000008
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
85064
85140
+
Arg
ACG
[ENA]
¡û
>W1710603270
FUYX01000002
Alphaproteobacteria
Bosea thiooxidans [FUYX]
533093
533017
-
Arg
ACG
[ENA]
¡û
>W1710660479
JXTJ01000018
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
254284
254360
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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