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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159488 (117 seq.)
>W1711009411
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
22051
21975
-
Met
CAT
[ENA]
¡û
>W131046706
AMSP01000001
Actinomycetota
Brevibacterium casei S18 [AMSP]
443339
443263
-
Met
CAT
[ENA]
¡û
>W131227714
AUFJ01000010
Actinomycetota
Brevibacterium album DSM 18261 [AUFJ]
490369
490293
-
Met
CAT
[ENA]
¡û
>C171057879
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
1847830
1847754
-
Met
CAT
-
¡û
>w005563
AAGP01000024
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
1102
1178
+
Met
CAT
[ENA]
¡û
>WENV181798302
OGRV01000016
[OGRV] human gut metagenome; fecal sample 3 from infant 4
142318
142392
+
fMet
CAT
[ENA]
¡û
>WENV181818194
OGTS01000020
[OGTS] human gut metagenome; fecal sample 4 from infant 4
142318
142392
+
fMet
CAT
[ENA]
¡û
>WENV181818873
OGTU01000063
[OGTU] human gut metagenome; fecal sample 6 from infant 4
27016
26942
-
fMet
CAT
[ENA]
¡û
>WENV182413149
OIFX01000103
[OIFX] human gut metagenome; stool
48764
48838
+
fMet
CAT
[ENA]
¡û
>W141241608
CAHK01000052
Actinomycetota
Brevibacterium senegalense JC43 [CAHK]
6278
6202
-
Met
CAT
[ENA]
¡û
>WENV182814915
OJYO01000032
[OJYO] human gut metagenome; human gut
52317
52391
+
fMet
CAT
[ENA]
¡û
>WENV182815261
OJYQ01000014
[OJYQ] human gut metagenome; human gut
34797
34723
-
fMet
CAT
[ENA]
¡û
>WENV182830836
OKEB01000011
[OKEB] human gut metagenome; human gut
32201
32275
+
fMet
CAT
[ENA]
¡û
>WENV182830926
OKEC01000130
[OKEC] human gut metagenome; human gut
1880
1954
+
fMet
CAT
[ENA]
¡û
>WENV182858137
OKOC01000084
[OKOC] human gut metagenome; human gut
861
787
-
fMet
CAT
[ENA]
¡û
>WENV183090584
OLKB01000012
[OLKB] human gut metagenome; human gut
35223
35149
-
fMet
CAT
[ENA]
¡û
>WENV170175973
CEOS01024379
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
380
304
-
Met
CAT
[ENA]
¡û
>C181172307
CP029033
Actinomycetota
Actinobaculum sp. 313 [CP029033]
2086024
2085950
-
Met
CAT
-
¡û
>C191031882
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
1983245
1983171
-
Met
CAT
-
¡û
>C191031930
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
1858820
1858746
-
Met
CAT
-
¡û
>C191031978
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
1769723
1769649
-
Met
CAT
-
¡û
>C191032025
CP025333
Actinomycetota
Brevibacterium aurantiacum SMQ-1419 [CP025333]
1802942
1802868
-
Met
CAT
-
¡û
>C191032073
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
1938718
1938644
-
Met
CAT
-
¡û
>C191174132
CP040020
Actinomycetota
Brevibacterium sp. CS2 [CP040020]
2072972
2073048
+
Met
CAT
-
¡û
>W1910181651
BJME01000020
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
87547
87473
-
Met
CAT
[ENA]
¡û
>W1910331229
FSLI01000040
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
61257
61333
+
Met
CAT
[ENA]
¡û
>W1910498628
FXWZ01000002
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
801360
801286
-
Met
CAT
[ENA]
¡û
>W1910500095
FXYZ01000008
Actinomycetota
6(3) [FXYZ]
274
348
+
Met
CAT
[ENA]
¡û
>W1910500190
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
302
228
-
Met
CAT
[ENA]
¡û
>W1910500228
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
695280
695356
+
Met
CAT
[ENA]
¡û
>W1910500295
FXZD01000007
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
148087
148013
-
Met
CAT
[ENA]
¡û
>W1910500340
FXZE01000015
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
66234
66310
+
Met
CAT
[ENA]
¡û
>W1910500410
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
129859
129933
+
Met
CAT
[ENA]
¡û
>W1910500518
FXZI01000004
Actinomycetota
8(6) [FXZI]
80558
80632
+
Met
CAT
[ENA]
¡û
>W1910871222
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
91727
91651
-
Met
CAT
[ENA]
¡û
>W1911203141
NRGO01000013
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
65595
65669
+
Met
CAT
[ENA]
¡û
>W1911203197
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
167
93
-
Met
CAT
[ENA]
¡û
>W1911203215
NRGQ01000003
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
174
248
+
Met
CAT
[ENA]
¡û
>W1911203617
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3656107
3656033
-
Met
CAT
[ENA]
¡û
>W1911203823
NRHA01000016
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
146875
146801
-
Met
CAT
[ENA]
¡û
>W1911203833
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
233085
233159
+
Met
CAT
[ENA]
¡û
>W1911696909
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
606914
606990
+
Met
CAT
[ENA]
¡û
>W1810057049
PDHL01000038
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
65547
65471
-
Met
CAT
[ENA]
¡û
>W1810756554
QPGC01000034
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
152454
152528
+
Met
CAT
[ENA]
¡û
>W1810756584
QPGD01000006
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
137544
137618
+
Met
CAT
[ENA]
¡û
>W1810756640
QPGE01000006
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
329582
329508
-
Met
CAT
[ENA]
¡û
>W2010095300
BJME01000020
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
87547
87473
-
fMet
CAT
[ENA]
¡û
>W2010149097
CAACXN010000014
Actinomycetota
Brevibacterium casei 3012STDY7078520 [CAACXN]
345959
345883
-
fMet
CAT
[ENA]
¡û
>W2010268186
CABKRC020000010
Actinomycetota
Brevibacterium senegalense [CABKRC]
6278
6202
-
fMet
CAT
[ENA]
¡û
>W2010274223
CABKVH020000003
Actinomycetota
Actinomycetaceae bacterium [CABKVH]
40045
39969
-
fMet
CAT
[ENA]
¡û
>W2010418331
FXWZ01000002
Actinomycetota
Brevibacterium ihuae CV3 [FXWZ]
801360
801286
-
fMet
CAT
[ENA]
¡û
>W2010419827
FXYZ01000008
Actinomycetota
6(3) [FXYZ]
274
348
+
fMet
CAT
[ENA]
¡û
>W2010419922
FXZB01000012
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
302
228
-
fMet
CAT
[ENA]
¡û
>W2010419960
FXZC01000002
Actinomycetota
Brevibacterium casei CIP 102111 [FXZC]
695280
695356
+
fMet
CAT
[ENA]
¡û
>W2010420027
FXZD01000007
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
148087
148013
-
fMet
CAT
[ENA]
¡û
>W2010420072
FXZE01000015
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
66234
66310
+
fMet
CAT
[ENA]
¡û
>W2010420142
FXZG01000003
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
129859
129933
+
fMet
CAT
[ENA]
¡û
>W2010420250
FXZI01000004
Actinomycetota
8(6) [FXZI]
80558
80632
+
fMet
CAT
[ENA]
¡û
>W2010567901
JAATJN010000001
Actinomycetota
Brevibacterium marinum DSM 18964 [JAATJN]
3109904
3109980
+
fMet
CAT
[ENA]
¡û
>W2010592023
JABEMC010000003
Actinomycetota
Brevibacterium luteolum CCUG 46604 [JABEMC]
51750
51824
+
fMet
CAT
[ENA]
¡û
>W2010595902
JABEVW010000002
Actinomycetota
Brevibacterium luteolum MOSEL-ME10a [JABEVW]
319489
319563
+
fMet
CAT
[ENA]
¡û
>W2010939952
NCWY01000005
Actinomycetota
Brevibacterium casei OG2 [NCWY]
91727
91651
-
fMet
CAT
[ENA]
¡û
>W2011048654
NRGO01000013
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
65595
65669
+
fMet
CAT
[ENA]
¡û
>W2011048710
NRGP01000013
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
167
93
-
fMet
CAT
[ENA]
¡û
>W2011048728
NRGQ01000003
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
174
248
+
fMet
CAT
[ENA]
¡û
>W2011049130
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
3656107
3656033
-
fMet
CAT
[ENA]
¡û
>W2011049336
NRHA01000016
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
146875
146801
-
fMet
CAT
[ENA]
¡û
>W2011049346
NRHB01000001
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
233085
233159
+
fMet
CAT
[ENA]
¡û
>W2011276957
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
606914
606990
+
fMet
CAT
[ENA]
¡û
>W2011417226
RHFF01000007
Actinomycetota
Brevibacterium aurantiacum L261 [RHFF]
67872
67946
+
fMet
CAT
[ENA]
¡û
>W2011417313
RHFH01000004
Actinomycetota
Brevibacterium sp. S111 [RHFH]
200822
200898
+
fMet
CAT
[ENA]
¡û
>W2011479841
RQSN01000006
Actinomycetota
Actinobaculum sp. 352 [RQSN]
180168
180242
+
fMet
CAT
[ENA]
¡û
>W2011538275
SCMW01000030
Actinomycetota
Brevibacterium sp. 2SA [SCMW]
39894
39818
-
fMet
CAT
[ENA]
¡û
>W2011615361
SJXG01000058
Actinomycetota
Brevibacterium sp. LS14 [SJXG]
77497
77573
+
fMet
CAT
[ENA]
¡û
>W2012006561
VEKE01000003
Actinomycetota
Brevibacterium casei DE0341 [VEKE]
75592
75668
+
fMet
CAT
[ENA]
¡û
>W2012008659
VELY01000002
Actinomycetota
Brevibacterium casei DE0115 [VELY]
296879
296803
-
fMet
CAT
[ENA]
¡û
>W2012029843
VFYR01000002
Actinomycetota
Brevibacterium sp. XM4083 [VFYR]
668635
668711
+
fMet
CAT
[ENA]
¡û
>W2012038591
VIGO01000002
Actinomycetota
Brevibacterium sp. CFH 10365 [VIGO]
511757
511833
+
fMet
CAT
[ENA]
¡û
>W2012086390
VLTK01000008
Actinomycetota
Brevibacterium aurantiacum XU54 [VLTK]
214581
214655
+
fMet
CAT
[ENA]
¡û
>W2012123821
VPFI01000004
Actinomycetota
Ruania sp. HY211 [VPFI]
140987
141061
+
fMet
CAT
[ENA]
¡û
>W2012131575
VSMB01000015
Actinomycetota
Haloactinobacterium sp. LNNU 22110 [VSMB]
51534
51460
-
fMet
CAT
[ENA]
¡û
>W2012327675
WHMT01000020
Actinomycetota
Pseudactinotalea sp. HY160 [WHMT]
43220
43296
+
fMet
CAT
[ENA]
¡û
>W2110166353
JABAHH010000007
Actinomycetota
Brevibacterium casei NAB46 [JABAHH]
3911
3835
-
fMet
CAT
[ENA]
¡û
>W2110178480
JABGBS010000007
Actinomycetota
Brevibacterium casei NAB46 [JABGBS]
3911
3835
-
fMet
CAT
[ENA]
¡û
>W2110187093
JABUXX010000002
Actinomycetota
Brevibacterium aurantiacum FME34 [JABUXX]
326403
326329
-
fMet
CAT
[ENA]
¡û
>W2110187162
JABUXY010000013
Actinomycetota
Brevibacterium aurantiacum FME43 [JABUXY]
202
128
-
fMet
CAT
[ENA]
¡û
>W2110187211
JABUXZ010000017
Actinomycetota
Brevibacterium aurantiacum FME45 [JABUXZ]
77942
78016
+
fMet
CAT
[ENA]
¡û
>W2110187249
JABUYA010000011
Actinomycetota
Brevibacterium aurantiacum FME48 [JABUYA]
24340
24414
+
fMet
CAT
[ENA]
¡û
>W2110187291
JABUYB010000005
Actinomycetota
Brevibacterium aurantiacum FME49 [JABUYB]
161698
161772
+
fMet
CAT
[ENA]
¡û
>W2110187349
JABUYC010000011
Actinomycetota
Brevibacterium aurantiacum FME9 [JABUYC]
91600
91526
-
fMet
CAT
[ENA]
¡û
>W2110259952
JACSPY010000004
Actinomycetota
Brevibacterium sp. Re57 [JACSPY]
140644
140570
-
fMet
CAT
[ENA]
¡û
>W2110301968
JADBHF010000017
Actinomycetota
Brevibacterium renqingii REN4 [JADBHF]
64781
64857
+
fMet
CAT
[ENA]
¡û
>W2110302002
JADBHG010000004
Actinomycetota
Brevibacterium renqingii REN4-1 [JADBHG]
185876
185800
-
fMet
CAT
[ENA]
¡û
>W2110458308
JAFBBX010000001
Actinomycetota
Brevibacterium luteolum DSM 15022 [JAFBBX]
1046954
1046880
-
fMet
CAT
[ENA]
¡û
>W2110484772
JAFEMW010000002
Actinomycetota
Brevibacterium sp. RIT 803 [JAFEMW]
192083
192157
+
fMet
CAT
[ENA]
¡û
>W2110605239
JAHHXW010000001
Actinomycetota
Brevibacterium luteolum 179-I 5A1 HS [JAHHXW]
733898
733824
-
fMet
CAT
[ENA]
¡û
>C201046704
CP030797
Actinomycetota
Brevibacterium linens RS16 [CP030797]
1798710
1798634
-
fMet
CAT
-
¡û
>C201063110
CP035810
Actinomycetota
Brevibacterium luteolum NEB1784 [CP035810]
1087320
1087246
-
fMet
CAT
-
¡û
>C201234692
CP050154
Actinomycetota
Brevibacterium sp. o2 [CP050154]
2324394
2324470
+
fMet
CAT
-
¡û
>C211168072
CP062936
Actinomycetota
Brevibacterium sp. SMBL_HHYL_HB1 [CP062936]
1788056
1788132
+
fMet
CAT
-
¡û
>C211172949
CP063169
Actinomycetota
Haloactinobacterium sp. RN3S43 [CP063169]
1377946
1378022
+
fMet
CAT
-
¡û
>C211210644
CP065629
Actinomycetota
Brevibacterium casei FDAARGOS_937 [CP065629]
1101950
1101874
-
fMet
CAT
-
¡û
>C211210691
CP065630
Actinomycetota
Brevibacterium casei FDAARGOS_936 [CP065630]
617710
617634
-
fMet
CAT
-
¡û
>C211212438
CP065682
Actinomycetota
Brevibacterium casei FDAARGOS_902 [CP065682]
2509048
2508972
-
fMet
CAT
-
¡û
>C211219139
CP065989
Actinomycetota
Brevibacterium casei FDAARGOS_990 [CP065989]
2491697
2491623
-
fMet
CAT
-
¡û
>C211244307
CP068173
Actinomycetota
Brevibacterium casei FDAARGOS_1100 [CP068173]
2437584
2437508
-
fMet
CAT
-
¡û
>C211318482
CP073089
Actinomycetota
Brevibacterium sp. W7.2 [CP073089]
2234123
2234199
+
fMet
CAT
-
¡û
>C211384988
CP081305
Actinomycetota
Brevibacterium casei G20 [CP081305]
1711312
1711236
-
fMet
CAT
-
¡û
>C231248800
CP088017
Actinomycetota
Ruania halotolerans M4N3S171 [CP088017]
3129260
3129184
-
fMet
CAT
-
¡û
>C231248824
CP088018
Actinomycetota
Ruania suaedae LR1S40 [CP088018]
1110140
1110216
+
fMet
CAT
-
¡û
>C231531136
CP110341
Actinomycetota
Brevibacterium sp. JSBI002 [CP110341]
1575622
1575547
-
fMet
CAT
-
¡û
>C241069004
CP042828
Actinomycetota
Ruania zhangjianzhongii HY168 [CP042828]
3888110
3888036
-
fMet
CAT
-
¡û
>C241103550
CP045920
Actinomycetota
Pseudactinotalea sp. HY158 [CP045920]
2904553
2904477
-
fMet
CAT
-
¡û
>W1610050898
BBGH01000475
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
738
662
-
Met
CAT
[ENA]
¡û
>W1610857931
LQQR01000014
Actinomycetota
Brevibacterium casei [LQQR]
22051
21975
-
Met
CAT
[ENA]
¡û
>W1710047297
BBGH01000475
Actinomycetota
Brevibacterium sp. JCM 18882 [BBGH]
738
662
-
Met
CAT
[ENA]
¡û
>W1710537565
FNTX01000001
Actinomycetota
Ruania alba album [FNTX]
539055
539131
+
Met
CAT
[ENA]
¡û
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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