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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159514 (110 seq.)
>W1711221592
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138965
138889
-
Arg
TCT
[ENA]
¡û
>W1711434587
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
714158
714234
+
Arg
TCT
[ENA]
¡û
>W131095838
AOPO01000002
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
540402
540478
+
Arg
TCT
[ENA]
¡û
>W131196488
ASTJ01000011
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
847172
847096
-
Arg
TCT
[ENA]
¡û
>W131220981
AUAB01000001
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
189991
190067
+
Arg
TCT
[ENA]
¡û
>W131174840
ARIT01000018
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
751459
751535
+
Arg
TCT
[ENA]
¡û
>W141252199
CBRE010000113
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
23375
23299
-
Arg
TCT
[ENA]
¡û
>WENV182548726
OJBX01000042
[OJBX] seawater metagenome; Sea water
35222
35298
+
Arg
TCT
[ENA]
¡û
>WENV182552626
OJCM01002705
[OJCM] seawater metagenome; Sea water
210
286
+
Arg
TCT
[ENA]
¡û
>WENV182568582
OJEV01010024
[OJEV] seawater metagenome; Sea water
366
290
-
Arg
TCT
[ENA]
¡û
>WENV182572673
OJFM01001222
[OJFM] seawater metagenome; Sea water
3906
3982
+
Arg
TCT
[ENA]
¡û
>WENV182576508
OJFX01043275
[OJFX] seawater metagenome; Sea water
390
314
-
Arg
TCT
[ENA]
¡û
>WENV182585296
OJHH01006744
[OJHH] seawater metagenome; Sea water
1314
1238
-
Arg
TCT
[ENA]
¡û
>WENV182588620
OJHV01003428
[OJHV] seawater metagenome; Sea water
411
335
-
Arg
TCT
[ENA]
¡û
>WENV182591138
OJIL01000021
[OJIL] seawater metagenome; Sea water
418
342
-
Arg
TCT
[ENA]
¡û
>WENV182591406
OJIO01000024
[OJIO] seawater metagenome; Sea water
35222
35298
+
Arg
TCT
[ENA]
¡û
>WENV182593249
OJIT01013409
[OJIT] seawater metagenome; Sea water
660
584
-
Arg
TCT
[ENA]
¡û
>W141275872
JADJ01000001
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
237342
237266
-
Arg
TCT
[ENA]
¡û
>WENV170014255
AXCI01003332
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
10943
11019
+
Arg
TCT
[ENA]
¡û
>WENV170014289
AXCI01004520
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
3546
3622
+
Arg
TCT
[ENA]
¡û
>WENV170112408
CEGE01005781
[CEGE] microbial mat metagenome; grass silage
339
263
-
Arg
TCT
[ENA]
¡û
>WENV170112538
CEGF01002690
[CEGF] microbial mat metagenome; grass silage
2434
2358
-
Arg
TCT
[ENA]
¡û
>WENV170672253
LAZR01000037
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
127147
127223
+
Arg
TCT
[ENA]
¡û
>WENV170675584
LDZP01000078
[LDZP] terrestrial metagenome; oil reservoir sample I1
66206
66130
-
Arg
TCT
[ENA]
¡û
>WENV170692505
LGOV01010986
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
83359
83283
-
Arg
TCT
[ENA]
¡û
>WENV170695994
LGVE01194949
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1537
1613
+
Arg
TCT
[ENA]
¡û
>WENV170699921
LGVF01680600
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1377
1453
+
Arg
TCT
[ENA]
¡û
>C191007771
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
2526059
2525983
-
Arg
TCT
-
¡û
>C191165483
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
4429091
4429015
-
Arg
TCT
-
¡û
>W141564636
JIAY01000002
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
723634
723710
+
Arg
TCT
[ENA]
¡û
>W141754441
JNVS01000014
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
109476
109400
-
Arg
TCT
[ENA]
¡û
>W141818884
JQLV01000001
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
1891639
1891715
+
Arg
TCT
[ENA]
¡û
>W1910006960
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
23109
23033
-
Arg
TCT
[ENA]
¡û
>W1910377532
FUKM01000003
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
134239
134163
-
Arg
TCT
[ENA]
¡û
>W1911148550
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241130
241206
+
Arg
TCT
[ENA]
¡û
>W1911203563
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
2461333
2461257
-
Arg
TCT
[ENA]
¡û
>W1810121106
PHUC01000002
Gammaproteobacteria
Halomonas sp. es.049 es.049 ES.049 [PHUC]
1438169
1438093
-
Arg
TCT
[ENA]
¡û
>W1810156504
PJBI01000054
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
236527
236451
-
Arg
TCT
[ENA]
¡û
>W1810157216
PJBT01000185
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
163511
163587
+
Arg
TCT
[ENA]
¡û
>W1810177446
PJRN01000007
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
55159
55083
-
Arg
TCT
[ENA]
¡û
>W1810364660
PVTK01000002
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
197200
197124
-
Arg
TCT
[ENA]
¡û
>W1810722031
QNTU01000001
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
139620
139544
-
Arg
TCT
[ENA]
¡û
>C151075882
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
2433085
2433009
-
Arg
TCT
[Ensembl]
¡û
>C151104173
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2732357
2732281
-
Arg
TCT
-
¡û
>W2010075318
BBQX01000038
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
23109
23033
-
Arg
TCT
[ENA]
¡û
>W2010103593
BJXV01000002
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
188970
189046
+
Arg
TCT
[ENA]
¡û
>W2010311120
CABWMN010000028
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
502416
502492
+
Arg
TCT
[ENA]
¡û
>W2010311149
CABWMO010000007
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
172890
172966
+
Arg
TCT
[ENA]
¡û
>W2010402369
FUKM01000003
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
134239
134163
-
Arg
TCT
[ENA]
¡û
>W2010598026
JABFHI010000009
Gammaproteobacteria
Halomonas sp. TBZ9 [JABFHI]
13525
13601
+
Arg
TCT
[ENA]
¡û
>W2010640501
JABWCV010000002
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
37732
37808
+
Arg
TCT
[ENA]
¡û
>W2010643340
JABWTB010000002
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
607267
607343
+
Arg
TCT
[ENA]
¡û
>W2010673383
JACCDE010000003
Gammaproteobacteria
Halomonas glaciei DD39 [JACCDE]
100309
100233
-
Arg
TCT
[ENA]
¡û
>W2010676017
JACCGK010000011
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
122240
122164
-
Arg
TCT
[ENA]
¡û
>W2011021481
NPEY01000004
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
241130
241206
+
Arg
TCT
[ENA]
¡û
>W2011049076
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
2461333
2461257
-
Arg
TCT
[ENA]
¡û
>W2011510791
RZHC01000023
Gammaproteobacteria
Halomonas sp. PC [RZHC]
365583
365659
+
Arg
TCT
[ENA]
¡û
>W2011510838
RZHD01000010
Gammaproteobacteria
Halomonas sp. RC [RZHD]
274682
274606
-
Arg
TCT
[ENA]
¡û
>W2011510872
RZHE01000007
Gammaproteobacteria
Halomonas sp. MC [RZHE]
29219
29295
+
Arg
TCT
[ENA]
¡û
>W2011510920
RZHF01000008
Gammaproteobacteria
Halomonas sp. JCM 18142 [RZHF]
125088
125012
-
Arg
TCT
[ENA]
¡û
>W2011657154
SOCZ01000012
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
112557
112481
-
Arg
TCT
[ENA]
¡û
>W2011978539
VCQL01000016
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
80676
80752
+
Arg
TCT
[ENA]
¡û
>W2012037790
VIFN01000001
Gammaproteobacteria
Halomonas sp. B1.N12 [VIFN]
746197
746273
+
Arg
TCT
[ENA]
¡û
>W2012094243
VNFE01000004
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
389173
389249
+
Arg
TCT
[ENA]
¡û
>W2012141875
VTPY01000002
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
157189
157113
-
Arg
TCT
[ENA]
¡û
>W2012352323
WJPH01000004
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
365870
365946
+
Arg
TCT
[ENA]
¡û
>W2110098326
CAJFDU010000026
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
965806
965882
+
Arg
TCT
[ENA]
¡û
>W2110098445
CAJFDW010000025
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
965736
965812
+
Arg
TCT
[ENA]
¡û
>W2110098555
CAJFDZ010000005
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
218073
217997
-
Arg
TCT
[ENA]
¡û
>W2110098737
CAJFEC010000030
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
191977
192053
+
Arg
TCT
[ENA]
¡û
>W2110177017
JABFAT010000013
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
227268
227192
-
Arg
TCT
[ENA]
¡û
>W2110188268
JABUYX010000001
Gammaproteobacteria
Halomonas sp. FME63 [JABUYX]
584833
584909
+
Arg
TCT
[ENA]
¡û
>W2110188335
JABUYY010000005
Gammaproteobacteria
Halomonas sp. FME64 [JABUYY]
183766
183690
-
Arg
TCT
[ENA]
¡û
>W2110188458
JABUZA010000021
Gammaproteobacteria
Halomonas sp. FME66 [JABUZA]
49815
49739
-
Arg
TCT
[ENA]
¡û
>W2110188554
JABUZC010000016
Gammaproteobacteria
Halomonas sp. 1M45 [JABUZC]
81188
81264
+
Arg
TCT
[ENA]
¡û
>W2110220283
JACIVL010000016
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
2115
2191
+
Arg
TCT
[ENA]
¡û
>W2110546352
JAGGRM010000002
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
205008
204932
-
Arg
TCT
[ENA]
¡û
>W2110546440
JAGGRN010000014
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
138965
138889
-
Arg
TCT
[ENA]
¡û
>W2110546494
JAGGRO010000015
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
128336
128412
+
Arg
TCT
[ENA]
¡û
>W2110546562
JAGGRP010000108
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
10048
10124
+
Arg
TCT
[ENA]
¡û
>W2110577288
JAGWDL010000004
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
267952
268028
+
Arg
TCT
[ENA]
¡û
>W2110640797
JAHRFY010000003
Gammaproteobacteria
Halomonadaceae bacterium MT13 [JAHRFY]
117056
116980
-
Arg
TCT
[ENA]
¡û
>W2110640863
JAHRFZ010000008
Gammaproteobacteria
Halomonadaceae bacterium MT32 [JAHRFZ]
154944
154868
-
Arg
TCT
[ENA]
¡û
>C201000632
AP019514
Gammaproteobacteria
Halomonas sulfidaeris ATCC BAA-803 [AP019514]
2004303
2004379
+
Arg
TCT
-
¡û
>C201087756
CP040451
Gammaproteobacteria
Halomonas sp. PA16-9 [CP040451]
2536482
2536558
+
Arg
TCT
-
¡û
>C211119369
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
3698707
3698631
-
Arg
TCT
-
¡û
>C211361196
CP077941
Gammaproteobacteria
Halomonadaceae bacterium MT13 [CP077941]
1651118
1651194
+
Arg
TCT
-
¡û
>C231136194
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
221788
221712
-
Arg
TCT
-
¡û
>C231226787
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
2479273
2479349
+
Arg
TCT
-
¡û
>W2110766573
RRZB01000028
Gammaproteobacteria
Halomonas sp. FME20 [RRZB]
24710
24634
-
Arg
TCT
[ENA]
¡û
>W2110766616
RRZC01000004
Gammaproteobacteria
Halomonas sp. FME16 [RRZC]
20299
20375
+
Arg
TCT
[ENA]
¡û
>W2110766679
RRZD01000008
Gammaproteobacteria
Halomonas sp. FME1 [RRZD]
34448
34524
+
Arg
TCT
[ENA]
¡û
>C231507314
CP107007
Gammaproteobacteria
Halomonas sp. GD1P12 [CP107007]
1882077
1882153
+
Arg
TCT
-
¡û
>C231534343
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
2334966
2335042
+
Arg
TCT
-
¡û
>W2110776084
VOGA01000007
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
113496
113572
+
Arg
TCT
[ENA]
¡û
>C231649484
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2013013
2013089
+
Arg
TCT
-
¡û
>W2110781702
WHVL01000005
Gammaproteobacteria
Halomonas malpeensis prim 29 [WHVL]
108538
108462
-
Arg
TCT
[ENA]
¡û
>W2130009100
CAJSTI010002331
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
77
+
Arg
TCT
[ENA]
¡û
>C241167485
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
1332370
1332446
+
Arg
TCT
-
¡û
>C241295113
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
1997775
1997851
+
Arg
TCT
-
¡û
>C241321540
CP134865
Gammaproteobacteria
Halomonas sp. PAMB 3232 [CP134865]
1806943
1806867
-
Arg
TCT
-
¡û
>C241321601
CP134866
Gammaproteobacteria
Halomonas sp. PAMB 3264 [CP134866]
1831562
1831486
-
Arg
TCT
-
¡û
>W1511479195
JWHY01000004
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
434973
435049
+
Arg
TCT
[ENA]
¡û
>W11180594
AGIB01000045
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
141713
141637
-
Arg
TCT
[ENA]
¡û
>W121016477
AGQZ01000065
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
49157
49233
+
Arg
TCT
[ENA]
¡û
>W1610612216
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
66206
66130
-
Arg
TCT
[ENA]
¡û
>W1611006061
LXRG01000054
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
138965
138889
-
Arg
TCT
[ENA]
¡û
>W1710518730
FNEF01000007
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
167697
167773
+
Arg
TCT
[ENA]
¡û
>W1710628366
JPUA01000037
Gammaproteobacteria
Halomonas campaniensis [JPUA]
133906
133830
-
Arg
TCT
[ENA]
¡û
>W1710733722
LGEN01000005
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
66206
66130
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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