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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159608 (79 seq.)
>W1710811740
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1710865770
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>W131235395
AULN01000019
Gammaproteobacteria
Luteimonas mephitis DSM 12574 [AULN]
126566
126490
-
Pro
GGG
[ENA]
¡û
>W131231914
AUIV01000010
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
81924
82000
+
Pro
GGG
[ENA]
¡û
>WENV180298317
OBJA01272481
[OBJA] soil metagenome; sediment, water from around vicinity
215
291
+
Pro
GGG
[ENA]
¡û
>WENV181171929
OEIV010410522
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
171
95
-
Pro
GGG
[ENA]
¡û
>WENV181852048
OGWF01003874
[OGWF] freshwater metagenome; freshwater
1057
981
-
Pro
GGG
[ENA]
¡û
>W141207706
AZNZ01000007
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
119008
118932
-
Pro
GGG
[ENA]
¡û
>WENV183731534
PJTT01000018
[PJTT] soil metagenome; Soil (2) enriched on wood chips
227478
227554
+
Pro
GGG
[ENA]
¡û
>WENV183731932
PJTU01000013
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
122418
122342
-
Pro
GGG
[ENA]
¡û
>WENV183732065
PJTV01000005
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
122418
122342
-
Pro
GGG
[ENA]
¡û
>WENV183744644
PJUL01000042
[PJUL] feces metagenome; Chicken feces enriched on filter paper
121179
121103
-
Pro
GGG
[ENA]
¡û
>WENV170009710
APMI01002088
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
298
222
-
Pro
GGG
[ENA]
¡û
>WENV170010720
APMI01026094
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2103
2179
+
Pro
GGG
[ENA]
¡û
>WENV170011123
APMI01044653
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2090
2014
-
Pro
GGG
[ENA]
¡û
>WENV170011975
APMI01107486
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2410
2486
+
Pro
GGG
[ENA]
¡û
>WENV170574464
FLYM01041370
[FLYM] hot springs metagenome; Sediment
113
37
-
Pro
GGG
[ENA]
¡û
>WENV170650628
JRYE01007282
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
469
545
+
Pro
GGG
[ENA]
¡û
>WENV170654608
JRYL01001975
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
112
188
+
Pro
GGG
[ENA]
¡û
>WENV170727278
LTCX01011592
[LTCX] gut metagenome; intestine contents (feces)
49
125
+
Pro
GGG
[ENA]
¡û
>C181021717
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
389988
389912
-
Pro
GGG
-
¡û
>C181080839
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
2817365
2817289
-
Pro
GGG
-
¡û
>W1911162528
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
366295
366371
+
Pro
GGG
[ENA]
¡û
>W1911218351
NRQR01000013
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
138883
138807
-
Pro
GGG
[ENA]
¡û
>W1911283690
NTJF01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
9539
9615
+
Pro
GGG
[ENA]
¡û
>W1911283736
NTJG01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
176731
176655
-
Pro
GGG
[ENA]
¡û
>W1911283839
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
248864
248788
-
Pro
GGG
[ENA]
¡û
>W1911405368
NWQO01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
48945
48869
-
Pro
GGG
[ENA]
¡û
>W1911405483
NWQR01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
445241
445165
-
Pro
GGG
[ENA]
¡û
>W1911543934
ORZJ01000150
Gammaproteobacteria
Xanthomonas fragariae PD 2905 [ORZJ]
17739
17663
-
Pro
GGG
[ENA]
¡û
>W1810195874
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
2085510
2085586
+
Pro
GGG
[ENA]
¡û
>W1810692809
QLKV01000011
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
101599
101675
+
Pro
GGG
[ENA]
¡û
>W1810914457
QVPD01000001
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
115649
115573
-
Pro
GGG
[ENA]
¡û
>W2010310309
CABWLZ010000009
Gammaproteobacteria
Luteimonas sp. 9C [CABWLZ]
17207
17283
+
Pro
GGG
[ENA]
¡û
>W2010676355
JACCJZ010000015
Gammaproteobacteria
Luteimonas sp. SJ-16 [JACCJZ]
48975
48899
-
Pro
GGG
[ENA]
¡û
>W2010701678
JACHGU010000003
Gammaproteobacteria
Pseudoxanthomonas broegbernensis DSM 12573 [JACHGU]
425955
425879
-
Pro
GGG
[ENA]
¡û
>W2010717819
JACHYJ010000002
Gammaproteobacteria
Luteimonas sp. RC10 [JACHYJ]
662274
662198
-
Pro
GGG
[ENA]
¡û
>W2010738861
JACJFT010000001
Gammaproteobacteria
Luteimonas sp. MC1782 [JACJFT]
46129
46205
+
Pro
GGG
[ENA]
¡û
>W2010743214
JACJVB010000002
Gammaproteobacteria
Luteimonas sp. MC1825 [JACJVB]
519557
519481
-
Pro
GGG
[ENA]
¡û
>W2010910318
MSZW01000023
Gammaproteobacteria
Thermomonas haemolytica LMG 19653 [MSZW]
371
295
-
Pro
GGG
[ENA]
¡û
>W2010918253
MWIP01000001
Gammaproteobacteria
Pseudoxanthomonas broegbernensis DSM 12573 [MWIP]
428786
428710
-
Pro
GGG
[ENA]
¡û
>W2011028701
NPZB01000002
Gammaproteobacteria
Lysobacter sp. AM20-91 [NPZB]
366295
366371
+
Pro
GGG
[ENA]
¡û
>W2011063245
NRQR01000013
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
138883
138807
-
Pro
GGG
[ENA]
¡û
>W2011074858
NTJH01000031
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
13691
13615
-
Pro
GGG
[ENA]
¡û
>W2011074899
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
248864
248788
-
Pro
GGG
[ENA]
¡û
>W2011187440
PDWM01000015
Gammaproteobacteria
Pseudoxanthomonas koreensis KCTC 12208 [PDWM]
28201
28277
+
Pro
GGG
[ENA]
¡û
>W2011187556
PDWP01000003
Gammaproteobacteria
Pseudoxanthomonas suwonensis DSM 17175 [PDWP]
116570
116646
+
Pro
GGG
[ENA]
¡û
>W2011416855
RFLY01000002
Gammaproteobacteria
Lysobacter sp. 4284/11 [RFLY]
170841
170917
+
Pro
GGG
[ENA]
¡û
>W2011460884
RPFN01000001
Gammaproteobacteria
Luteimonas sp. 100069 [RPFN]
642858
642934
+
Pro
GGG
[ENA]
¡û
>W2011486122
RRYK01000010
Gammaproteobacteria
Pseudoxanthomonas sp. SGNA-20 [RRYK]
79174
79250
+
Pro
GGG
[ENA]
¡û
>W2011486203
RRYM01000001
Gammaproteobacteria
Pseudoxanthomonas sp. SGD-5-1 [RRYM]
118537
118461
-
Pro
GGG
[ENA]
¡û
>W2011627690
SMAP01000010
Gammaproteobacteria
Thermomonas haemolytica DSM 13605 [SMAP]
350
274
-
Pro
GGG
[ENA]
¡û
>W2011640400
SMTF01000003
Gammaproteobacteria
Luteimonas aestuarii B9 [SMTF]
318531
318455
-
Pro
GGG
[ENA]
¡û
>W2011640435
SMTG01000002
Gammaproteobacteria
Luteimonas terrae THG-MD21 [SMTG]
1439343
1439267
-
Pro
GGG
[ENA]
¡û
>W2011679799
SROY01000003
Gammaproteobacteria
Thermomonas fusca SHC 3-19 [SROY]
155534
155458
-
Pro
GGG
[ENA]
¡û
>W2012080445
VLJS01000065
Gammaproteobacteria
Pseudoxanthomonas taiwanensis J19 [VLJS]
1929
1853
-
Pro
GGG
[ENA]
¡û
>W2012103126
VOHK01000004
Gammaproteobacteria
Luteimonas marina FR1330 [VOHK]
476007
475931
-
Pro
GGG
[ENA]
¡û
>W2012139424
VTFT01000001
Gammaproteobacteria
Luteimonas sp. XBU10 [VTFT]
3105689
3105765
+
Pro
GGG
[ENA]
¡û
>W2012143139
VTRE01000001
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae DE0062 [VTRE]
572554
572478
-
Pro
GGG
[ENA]
¡û
>W2012446432
WUSX01000003
Gammaproteobacteria
Luteimonas sp. MIC 1.5 [WUSX]
138880
138804
-
Pro
GGG
[ENA]
¡û
>W2110048364
BMXY01000001
Gammaproteobacteria
Lysobacter xinjiangensis KCTC 22558 [BMXY]
527113
527189
+
Pro
GGG
[ENA]
¡û
>W2110050827
BMZT01000005
Gammaproteobacteria
Luteimonas padinae KCTC 52403 [BMZT]
183950
183874
-
Pro
GGG
[ENA]
¡û
>W2110428883
JAEMNY010000001
Gammaproteobacteria
Luteimonas sp. MC1828 [JAEMNY]
54517
54593
+
Pro
GGG
[ENA]
¡û
>W2110454130
JAETWA010000042
Gammaproteobacteria
Luteimonas sp. SJ-9 [JAETWA]
18708
18784
+
Pro
GGG
[ENA]
¡û
>W2110692713
JAIQDJ010000001
Gammaproteobacteria
Thermomonas sp. RSS23 [JAIQDJ]
737288
737364
+
Pro
GGG
[ENA]
¡û
>C211147961
CP061497
Gammaproteobacteria
Thermomonas sp. XSG [CP061497]
674396
674320
-
Pro
GGG
-
¡û
>C211152017
CP061714
Gammaproteobacteria
Luteimonas sp. MC1825 [CP061714]
2024261
2024185
-
Pro
GGG
-
¡û
>W2110717451
JAJAVH010000014
Gammaproteobacteria
Luteimonas panaciterrae Gsoil 068 [JAJAVH]
66230
66154
-
Pro
GGG
[ENA]
¡û
>C231331306
CP093311
Gammaproteobacteria
Thermomonas sp. IMCC34681 [CP093311]
826991
827067
+
Pro
GGG
-
¡û
>C11118136
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1264893
1264969
+
Pro
GGG
[Ensembl]
¡û
>W1511582564
LASZ01000006
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
202968
203044
+
Pro
GGG
[ENA]
¡û
>W1610547667
JUKH01000016
Gammaproteobacteria
Luteimonas abyssi [JUKH]
29335
29259
-
Pro
GGG
[ENA]
¡û
>W1610675837
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
1890091
1890015
-
Pro
GGG
[ENA]
¡û
>W1610728116
LMGY01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
338311
338387
+
Pro
GGG
[ENA]
¡û
>WENV077723
AAFX01093916
Soil microbial communities from Minnesota Farm
500
422
-
Pro
GGG
[ENA]
>W1710527408
FNKZ01000002
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
502180
502104
-
Pro
GGG
[ENA]
¡û
>W1710579415
FPCI01000002
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
806560
806636
+
Pro
GGG
[ENA]
¡û
>W1710582998
FQUK01000039
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
8296
8372
+
Pro
GGG
[ENA]
¡û
>W1710650912
JUKH01000016
Gammaproteobacteria
Luteimonas abyssi [JUKH]
29335
29259
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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