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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159676 (75 seq.)
>W1711075396
LSKJ01000519
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
7067
7143
+
Pro
GGG
[ENA]
¡û
>W1711386265
MEFC01000047
Alphaproteobacteria
Rhodospirillales bacterium SCN 65-16 [MEFC]
8595
8519
-
Pro
GGG
[ENA]
¡û
>W1711437791
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
3789993
3789917
-
Pro
GGG
[ENA]
¡û
>W1711501630
MKRV01000254
Alphaproteobacteria
Alphaproteobacteria bacterium 65-37 [MKRV]
22609
22533
-
Pro
GGG
[ENA]
¡û
>C171047051
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
3686855
3686931
+
Pro
GGG
-
¡û
>C171075894
CP018221
Alphaproteobacteria
Tardibacter chloracetimidivorans JJ-A5 [CP018221]
1306862
1306786
-
Pro
GGG
-
¡û
>WENV180019691
FTCH01000167
[FTCH] metagenome; soil
15
91
+
Pro
GGG
[ENA]
¡û
>WENV180020228
FTCZ01000228
[FTCZ] metagenome; soil
1912
1988
+
Pro
GGG
[ENA]
¡û
>WENV180020244
FTCZ01000470
[FTCZ] metagenome; soil
101
25
-
Pro
GGG
[ENA]
¡û
>WENV180027983
FTIZ01413294
[FTIZ] metagenome; soil
94
170
+
Pro
GGG
[ENA]
¡û
>WENV180690390
OCZS010004768
[OCZS] soil metagenome; soil
1660
1584
-
Pro
GGG
[ENA]
¡û
>WENV181172812
OEIV011001060
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
146
70
-
Pro
GGG
[ENA]
¡û
>WENV181223662
OFDC01063484
[OFDC] hot springs metagenome; Water
603
527
-
Pro
GGG
[ENA]
¡û
>W141244518
CAKO01000007
Alphaproteobacteria
Reyranella massiliensis 521 [CAKO]
165512
165436
-
Pro
GGG
[ENA]
¡û
>WENV183672709
ORJL011201684
[ORJL] groundwater metagenome; groundwater
861
785
-
Pro
GGG
[ENA]
¡û
>WENV183678156
ORJL011843445
[ORJL] groundwater metagenome; groundwater
3104
3180
+
Pro
GGG
[ENA]
¡û
>WENV170706594
LNAP01004483
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5004
4928
-
Pro
GGG
[ENA]
¡û
>WENV170712021
LNFM01009185
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3497
3573
+
Pro
GGG
[ENA]
¡û
>WENV170712423
LNFM01013209
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20156
20080
-
Pro
GGG
[ENA]
¡û
>W1910548713
FZOS01000006
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
80840
80764
-
Pro
GGG
[ENA]
¡û
>W1911391049
NWBU01000005
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
453014
453090
+
Pro
GGG
[ENA]
¡û
>W1911687950
QLJC01000023
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env8_1116 [QLJC]
49028
48952
-
Pro
GGG
[ENA]
¡û
>W1911688066
QLJF01000008
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env2_1116 [QLJF]
196804
196880
+
Pro
GGG
[ENA]
¡û
>W1911688210
QLJI01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt4_0816 [QLJI]
49029
48953
-
Pro
GGG
[ENA]
¡û
>W1911688273
QLJJ01000016
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt2_0716 [QLJJ]
104355
104279
-
Pro
GGG
[ENA]
¡û
>W1911688347
QLJL01000005
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
166477
166553
+
Pro
GGG
[ENA]
¡û
>W1911718465
QQWJ01000005
Alphaproteobacteria
Sphingomonas koreensis KCTC 2883 [QQWJ]
195124
195200
+
Pro
GGG
[ENA]
¡û
>W1911718618
QQWM01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env15_0417 [QQWM]
196850
196926
+
Pro
GGG
[ENA]
¡û
>W1911718808
QQWQ01000026
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env9_0217 [QQWQ]
49147
49071
-
Pro
GGG
[ENA]
¡û
>W1911718898
QQWS01000020
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt9_0208 [QQWS]
49023
48947
-
Pro
GGG
[ENA]
¡û
>W1911719283
QQXA01000023
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt14_0612 [QQXA]
49028
48952
-
Pro
GGG
[ENA]
¡û
>W1911719348
QQXC01000002
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt11_0411 [QQXC]
49023
48947
-
Pro
GGG
[ENA]
¡û
>W1911719392
QQXD01000004
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Pt12_0112 [QQXD]
196827
196903
+
Pro
GGG
[ENA]
¡û
>W1911719445
QQXE01000006
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env5_1116 [QQXE]
14341
14417
+
Pro
GGG
[ENA]
¡û
>W1911719926
QQXS01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env54_1217 [QQXS]
14315
14391
+
Pro
GGG
[ENA]
¡û
>W1911719986
QQXT01000023
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env57_1217 [QQXT]
49029
48953
-
Pro
GGG
[ENA]
¡û
>W1911720383
QQYC01000007
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env45_1017 [QQYC]
196817
196893
+
Pro
GGG
[ENA]
¡û
>W1911720802
QQYL01000021
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env37_0717 [QQYL]
14320
14396
+
Pro
GGG
[ENA]
¡û
>W1911720850
QQYM01000022
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env35_0717 [QQYM]
49194
49118
-
Pro
GGG
[ENA]
¡û
>W1911720922
QQYO01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env33_0717 [QQYO]
237063
236987
-
Pro
GGG
[ENA]
¡û
>W1911721053
QQYR01000003
Alphaproteobacteria
Sphingomonas koreensis SK-NIH.Env30_0717 [QQYR]
196940
197016
+
Pro
GGG
[ENA]
¡û
>W1810109412
PHHF01000071
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
12276
12352
+
Pro
GGG
[ENA]
¡û
>W2010430474
FZOS01000006
Alphaproteobacteria
Sphingomonas laterariae LNB2 [FZOS]
80840
80764
-
Pro
GGG
[ENA]
¡û
>W2010534573
JAAOZC010000003
Alphaproteobacteria
Sphingomonas vulcanisoli CECT 8804 [JAAOZC]
144137
144061
-
Pro
GGG
[ENA]
¡û
>W2010559770
JAASQK010000003
Alphaproteobacteria
Sphingomonas oligoaromativorans DSM 102246 [JAASQK]
325290
325214
-
Pro
GGG
[ENA]
¡û
>W2010682085
JACEIB010000007
Alphaproteobacteria
Sphingomonas sp. CGMCC 1.13654 [JACEIB]
255569
255493
-
Pro
GGG
[ENA]
¡û
>W2010718088
JACHYN010000006
Alphaproteobacteria
Azospirillum sp. OGB3 [JACHYN]
180152
180076
-
Pro
GGG
[ENA]
¡û
>W2011133587
NWBU01000005
Alphaproteobacteria
Sphingomonas sp. FW-11 [NWBU]
453014
453090
+
Pro
GGG
[ENA]
¡û
>W2012023849
VFSU01000034
Alphaproteobacteria
Sandaracinobacter sp. PAMC 28131 [VFSU]
416089
416165
+
Pro
GGG
[ENA]
¡û
>W2012097933
VNIM01000031
Alphaproteobacteria
Sphingomonas sp. R4DWN [VNIM]
6029
5953
-
Pro
GGG
[ENA]
¡û
>W2012425999
WRPK01000001
Alphaproteobacteria
Sphingomonas formosensis CC-Nfb-2 [WRPK]
876574
876498
-
Pro
GGG
[ENA]
¡û
>W2012428101
WSFN01000024
Alphaproteobacteria
Sphingomonas sp. MAH-6 [WSFN]
255569
255493
-
Pro
GGG
[ENA]
¡û
>W2110081132
CAIKZO010000011
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIKZO]
8680
8604
-
Pro
GGG
[ENA]
¡û
>W2110082727
CAIMXB010000581
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIMXB]
1413
1489
+
Pro
GGG
[ENA]
¡û
>W2110087721
CAITZR010000509
Alphaproteobacteria
Enhydrobacter aerosaccus [CAITZR]
2454
2378
-
Pro
GGG
[ENA]
¡û
>W2110201007
JACCJY010000002
Alphaproteobacteria
Azospirillum sp. W712 [JACCJY]
177325
177249
-
Pro
GGG
[ENA]
¡û
>W2110304880
JADCUC010000003
Alphaproteobacteria
Sandaracinobacteroides hominis SZY PN-1 [JADCUC]
180149
180225
+
Pro
GGG
[ENA]
¡û
>W2110613855
JAHKRT010000008
Alphaproteobacteria
Sphingomonas sp. XMGL2 [JAHKRT]
160535
160459
-
Pro
GGG
[ENA]
¡û
>W2110635451
JAHOPB010000003
Alphaproteobacteria
Reyranella sp. MMS21-HV4-11 [JAHOPB]
111370
111294
-
Pro
GGG
[ENA]
¡û
>C201182071
CP046535
Alphaproteobacteria
Sphingomonas sp. LMO-1 [CP046535]
1723667
1723591
-
Pro
GGG
-
¡û
>C201261358
CP053346
Alphaproteobacteria
Sphingomonas sp. AP4-R1 [CP053346]
116565
116641
+
Pro
GGG
-
¡û
>C211397931
CP082839
Alphaproteobacteria
Sphingomonas sp. AK-PDB1-5 [CP082839]
4236640
4236564
-
Pro
GGG
-
¡û
>C231166243
CP080430
Alphaproteobacteria
Sphingomonas sp. DS-9 [CP080430]
4725316
4725392
+
Pro
GGG
-
¡û
>C231201314
CP084930
Alphaproteobacteria
Sphingomonas morindae NBD5 [CP084930, CP084931]
971063
971139
+
Pro
GGG
-
¡û
>C231595892
CP117411
Alphaproteobacteria
Sphingomonas naphthae KACC 18716 [CP117411]
1518886
1518810
-
Pro
GGG
-
¡û
>C241133156
CP049107
Alphaproteobacteria
Rhizorhabdus phycosphaerae MK52 [CP049107]
3850631
3850707
+
Pro
GGG
-
¡û
>W2110784405
WMBU01000001
Alphaproteobacteria
Rhizorhabdus histidinilytica BT1 5.2 [WMBU]
254015
253939
-
Pro
GGG
[ENA]
¡û
>W2130006619
CAIYJG010000130
Alphaproteobacteria
Enhydrobacter aerosaccus [CAIYJG]
7654
7578
-
Pro
GGG
[ENA]
¡û
>W1511633038
LDES01000009
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
17943
17867
-
Pro
GGG
[ENA]
¡û
>W11167361
AFMP01000044
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
11641
11717
+
Pro
GGG
[ENA]
¡û
>C131011881
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
1465349
1465273
-
Pro
GGG
[Ensembl]
¡û
>W1610914701
LSKJ01000519
Alphaproteobacteria
Rhodospirillaceae bacterium CCH5-H10 [LSKJ]
7067
7143
+
Pro
GGG
[ENA]
¡û
>W1710575579
FOZG01000003
Alphaproteobacteria
Sphingomonas jatrophae S5-249 [FOZG]
561142
561218
+
Pro
GGG
[ENA]
¡û
>W1710602763
FUYM01000012
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
20736
20660
-
Pro
GGG
[ENA]
¡û
>W1710626677
JPIR01000017
Alphaproteobacteria
Azospirillum brasilense [JPIR]
55882
55806
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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