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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159798 (137 seq.)
>W1711068967
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
87237
87312
+
Arg
TCT
[ENA]
¡û
>W131196460
ASTI01000010
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
56677
56602
-
Arg
TCT
[ENA]
¡û
>W1711484725
MKDC01000004
Bacillota
Latilactobacillus sakei [MKDC]
51290
51365
+
Arg
TCT
[ENA]
¡û
>W1711484766
MKDD01000001
Bacillota
Latilactobacillus sakei [MKDD]
134099
134024
-
Arg
TCT
[ENA]
¡û
>W1711484817
MKDE01000001
Bacillota
Latilactobacillus sakei [MKDE]
187795
187720
-
Arg
TCT
[ENA]
¡û
>W1711484923
MKDG01000006
Bacillota
Latilactobacillus curvatus [MKDG]
13732
13659
-
Arg
TCT
[ENA]
¡û
>W1711485018
MKDI01000023
Bacillota
Latilactobacillus sakei [MKDI]
68470
68545
+
Arg
TCT
[ENA]
¡û
>W1711485042
MKDJ01000010
Bacillota
Latilactobacillus sakei [MKDJ]
152872
152797
-
Arg
TCT
[ENA]
¡û
>W1711485235
MKDR01000007
Bacillota
Latilactobacillus curvatus [MKDR]
43159
43232
+
Arg
TCT
[ENA]
¡û
>W1711487498
MKGB01000008
Bacillota
Latilactobacillus sakei [MKGB]
121510
121585
+
Arg
TCT
[ENA]
¡û
>W1711487535
MKGC01000001
Bacillota
Latilactobacillus curvatus [MKGC]
3118
3191
+
Arg
TCT
[ENA]
¡û
>W1711487558
MKGD01000001
Bacillota
Latilactobacillus curvatus [MKGD]
104772
104699
-
Arg
TCT
[ENA]
¡û
>C171057575
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1358549
1358476
-
Arg
TCT
-
¡û
>C012659
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
643601
643528
-
Arg
TCT
[Ensembl]
¡û
>W141228338
BALW01000001
Bacillota
Latilactobacillus sakei subsp. sakei JCM 1157 [BALW]
463903
463978
+
Arg
TCT
[ENA]
¡û
>WENV183201613
OLPW01064248
[OLPW] human gut metagenome; faeces
370
295
-
Arg
TCT
[ENA]
¡û
>C181003619
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
1790498
1790573
+
Arg
TCT
-
¡û
>C181003679
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1271050
1271125
+
Arg
TCT
-
¡û
>C181044653
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
631906
631831
-
Arg
TCT
-
¡û
>C181066110
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1437886
1437813
-
Arg
TCT
-
¡û
>C181066177
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1434131
1434058
-
Arg
TCT
-
¡û
>C181071518
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
195260
195185
-
Arg
TCT
-
¡û
>C181113669
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1506228
1506153
-
Arg
TCT
-
¡û
>C181114064
CP025206
Bacillota
Latilactobacillus sakei WiKim0074 [CP025206]
460982
461057
+
Arg
TCT
-
¡û
>C181123572
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
725340
725265
-
Arg
TCT
-
¡û
>C181186107
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1328043
1327970
-
Arg
TCT
-
¡û
>C181194851
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1434311
1434238
-
Arg
TCT
-
¡û
>C181227456
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
649216
649141
-
Arg
TCT
-
¡û
>C181227518
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
726825
726750
-
Arg
TCT
-
¡û
>C181227579
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
707946
707871
-
Arg
TCT
-
¡û
>C181227640
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
730766
730691
-
Arg
TCT
-
¡û
>C181227701
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
687352
687277
-
Arg
TCT
-
¡û
>C191004223
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1342952
1342879
-
Arg
TCT
-
¡û
>C191035507
CP025476
Bacillota
Latilactobacillus curvatus IRG2 [CP025476]
620947
621020
+
Arg
TCT
-
¡û
>C191040492
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
176944
177017
+
Arg
TCT
-
¡û
>C191092651
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
1014739
1014664
-
Arg
TCT
-
¡û
>C191092731
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
700420
700345
-
Arg
TCT
-
¡û
>C191092852
CP032640
Bacillota
Latilactobacillus sakei ZFM229 [CP032640]
550563
550488
-
Arg
TCT
-
¡û
>C191092987
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1146304
1146379
+
Arg
TCT
-
¡û
>C191134899
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1418075
1418002
-
Arg
TCT
-
¡û
>W09127587
ACLD01000004
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
75154
75079
-
Arg
TCT
[ENA]
¡û
>W1910180943
BJLN01000006
Bacillota
Lactobacillus sakei NBRC 3541 [BJLN]
48564
48489
-
Arg
TCT
[ENA]
¡û
>W1910184444
BJOQ01000021
Bacillota
Lactobacillus curvatus NBRC 15884 [BJOQ]
3987
3914
-
Arg
TCT
[ENA]
¡û
>W1910471957
FXDK01000010
Bacillota
Lactobacillus curvatus [FXDK]
35053
35126
+
Arg
TCT
[ENA]
¡û
>W1910751886
MKDL01000009
Bacillota
Lactobacillus sakei RI-493 [MKDL]
58909
58984
+
Arg
TCT
[ENA]
¡û
>W1910751923
MKDM01000005
Bacillota
Lactobacillus sakei RI-496 [MKDM]
143106
143181
+
Arg
TCT
[ENA]
¡û
>W1910751955
MKDN01000007
Bacillota
Lactobacillus sakei RI-499 [MKDN]
123405
123480
+
Arg
TCT
[ENA]
¡û
>W1910752026
MKDO01000020
Bacillota
Lactobacillus sakei RI-500 [MKDO]
56677
56602
-
Arg
TCT
[ENA]
¡û
>W1910753003
MKGG01000026
Bacillota
Lactobacillus sakei RI-516 [MKGG]
68468
68543
+
Arg
TCT
[ENA]
¡û
>W1910753049
MKGH01000040
Bacillota
Lactobacillus sakei RI-517 [MKGH]
121457
121532
+
Arg
TCT
[ENA]
¡û
>W1911493412
OBHK01000004
Bacillota
Lactobacillus sakei J160x1 [OBHK]
51374
51299
-
Arg
TCT
[ENA]
¡û
>W1911493476
OBHL01000017
Bacillota
Lactobacillus sakei J156 [OBHL]
32300
32225
-
Arg
TCT
[ENA]
¡û
>W1911493557
OBHN01000004
Bacillota
Lactobacillus sakei J112 [OBHN]
38483
38408
-
Arg
TCT
[ENA]
¡û
>W1911533887
OKRC01000005
Bacillota
Lactobacillus sakei CECT 9267 [OKRC]
25845
25920
+
Arg
TCT
[ENA]
¡û
>W1911551477
OVTU01000001
Bacillota
Lactobacillus sakei CECT 9624 [OVTU]
1006816
1006891
+
Arg
TCT
[ENA]
¡û
>W1911631476
PUFE01000027
Bacillota
Lactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
465315
465390
+
Arg
TCT
[ENA]
¡û
>W1911706043
QOSE01000002
Bacillota
Lactobacillus sakei TMW 1.411 [QOSE]
20661
20586
-
Arg
TCT
[ENA]
¡û
>W2010094629
BJLN01000006
Bacillota
Lactobacillus sakei NBRC 3541 [BJLN]
48564
48489
-
Arg
TCT
[ENA]
¡û
>W2010098059
BJOQ01000021
Bacillota
Lactobacillus curvatus NBRC 15884 [BJOQ]
3987
3914
-
Arg
TCT
[ENA]
¡û
>W2010100554
BJVN01000004
Bacillota
Lactobacillus sakei subsp. sakei NBRC 15893 [BJVN]
50551
50626
+
Arg
TCT
[ENA]
¡û
>W2010105974
BKAA01000005
Bacillota
Lactobacillus sakei subsp. carnosus NBRC 107868 [BKAA]
50613
50688
+
Arg
TCT
[ENA]
¡û
>W2010167030
CABFKU010000056
Bacillota
Lactobacillus sakei [CABFKU]
73433
73508
+
Arg
TCT
[ENA]
¡û
>W2010247143
CABIVZ020000045
Bacillota
Lactobacillus curvatus [CABIVZ]
9807
9734
-
Arg
TCT
[ENA]
¡û
>W2010283569
CABMJT010000001
Bacillota
Lactobacillus sakei [CABMJT]
649216
649141
-
Arg
TCT
[ENA]
¡û
>W2010410862
FXDK01000010
Bacillota
Lactobacillus curvatus [FXDK]
35053
35126
+
Arg
TCT
[ENA]
¡û
>W2010882827
MKDL01000009
Bacillota
Lactobacillus sakei RI-493 [MKDL]
58909
58984
+
Arg
TCT
[ENA]
¡û
>W2010882864
MKDM01000005
Bacillota
Lactobacillus sakei RI-496 [MKDM]
143106
143181
+
Arg
TCT
[ENA]
¡û
>W2010882896
MKDN01000007
Bacillota
Lactobacillus sakei RI-499 [MKDN]
123405
123480
+
Arg
TCT
[ENA]
¡û
>W2010882967
MKDO01000020
Bacillota
Lactobacillus sakei RI-500 [MKDO]
56677
56602
-
Arg
TCT
[ENA]
¡û
>W2010883183
MKGG01000026
Bacillota
Lactobacillus sakei RI-516 [MKGG]
68468
68543
+
Arg
TCT
[ENA]
¡û
>W2010883229
MKGH01000040
Bacillota
Lactobacillus sakei RI-517 [MKGH]
121457
121532
+
Arg
TCT
[ENA]
¡û
>W2011154363
OBHK01000004
Bacillota
Lactobacillus sakei J160x1 [OBHK]
51374
51299
-
Arg
TCT
[ENA]
¡û
>W2011154427
OBHL01000017
Bacillota
Lactobacillus sakei J156 [OBHL]
32300
32225
-
Arg
TCT
[ENA]
¡û
>W2011154508
OBHN01000004
Bacillota
Lactobacillus sakei J112 [OBHN]
38483
38408
-
Arg
TCT
[ENA]
¡û
>W2011166574
OKRC01000005
Bacillota
Lactobacillus sakei CECT 9267 [OKRC]
25845
25920
+
Arg
TCT
[ENA]
¡û
>W2011175382
OVTU01000001
Bacillota
Lactobacillus sakei CECT 9624 [OVTU]
1006816
1006891
+
Arg
TCT
[ENA]
¡û
>W2011222491
PUFE01000027
Bacillota
Lactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
465315
465390
+
Arg
TCT
[ENA]
¡û
>W2011281160
QOSE01000002
Bacillota
Lactobacillus sakei TMW 1.411 [QOSE]
20661
20586
-
Arg
TCT
[ENA]
¡û
>W2011536065
SCIF01000002
Bacillota
Lactobacillus sakei L15 [SCIF]
78731
78806
+
Arg
TCT
[ENA]
¡û
>W2011697560
SUMW01000002
Bacillota
Lactobacillus curvatus S46 [SUMW]
38133
38206
+
Arg
TCT
[ENA]
¡û
>W2012358424
WKKT01000003
Bacillota
Lactobacillus curvatus VRA_2sq_n [WKKT]
120231
120304
+
Arg
TCT
[ENA]
¡û
>W2012358828
WKLA01000003
Bacillota
Lactobacillus curvatus VRA_2sq_f [WKLA]
120254
120327
+
Arg
TCT
[ENA]
¡û
>W2110118982
CAJOCF010000004
Bacillota
Latilactobacillus sp. AMBP162 [CAJOCF]
98943
98870
-
Arg
TCT
[ENA]
¡û
>W2110119034
CAJOCG010000002
Bacillota
Latilactobacillus sp. AMBP252 [CAJOCG]
170125
170052
-
Arg
TCT
[ENA]
¡û
>W2110506191
JAFJMA010000002
Bacillota
Latilactobacillus curvatus FAM25164 [JAFJMA]
3552
3625
+
Arg
TCT
[ENA]
¡û
>C211025689
AP024685
Bacillota
Latilactobacillus curvatus WDN19 [AP024685]
604012
603939
-
Arg
TCT
-
¡û
>C211338044
CP075489
Bacillota
Latilactobacillus sakei subsp. sakei ob4.1 [CP075489]
730063
729988
-
Arg
TCT
-
¡û
>C231029035
CP015487
Bacillota
Latilactobacillus sakei TMW 1.46 [CP015487]
687569
687494
-
Arg
TCT
-
¡û
>C231029072
CP015489
Bacillota
Latilactobacillus curvatus TMW 1.439 [CP015489]
565152
565225
+
Arg
TCT
-
¡û
>C231029135
CP015490
Bacillota
Latilactobacillus curvatus TMW 1.624 [CP015490]
578237
578310
+
Arg
TCT
-
¡û
>C231029222
CP015493
Bacillota
Latilactobacillus curvatus TMW 1.1381 [CP015493]
1383209
1383136
-
Arg
TCT
-
¡û
>C231029286
CP015494
Bacillota
Latilactobacillus curvatus TMW 1.1390 [CP015494]
1422192
1422119
-
Arg
TCT
-
¡û
>C231029788
CP016216
Bacillota
Latilactobacillus curvatus TMW 1.401 [CP016216]
563248
563321
+
Arg
TCT
-
¡û
>C231029851
CP016218
Bacillota
Latilactobacillus curvatus TMW 1.407 [CP016218]
530093
530166
+
Arg
TCT
-
¡û
>C231029914
CP016221
Bacillota
Latilactobacillus curvatus TMW 1.421 [CP016221]
555147
555220
+
Arg
TCT
-
¡û
>C231030004
CP016465
Bacillota
Latilactobacillus sakei TMW 1.3 [CP016465]
674852
674777
-
Arg
TCT
-
¡û
>C231030009
CP016467
Bacillota
Latilactobacillus curvatus TMW 1.27 [CP016467]
389733
389806
+
Arg
TCT
-
¡û
>C231030095
CP016470
Bacillota
Latilactobacillus curvatus TMW 1.595 [CP016470]
1450955
1450882
-
Arg
TCT
-
¡û
>C231030158
CP016472
Bacillota
Latilactobacillus curvatus TMW 1.167 [CP016472]
1382899
1382826
-
Arg
TCT
-
¡û
>C231030283
CP017271
Bacillota
Latilactobacillus sakei subsp. sakei TMW 1.1189 [CP017271]
710704
710629
-
Arg
TCT
-
¡û
>C231030346
CP017272
Bacillota
Latilactobacillus sakei TMW 1.1239 [CP017272]
706354
706279
-
Arg
TCT
-
¡û
>C231030371
CP017273
Bacillota
Latilactobacillus sakei TMW 1.1396 [CP017273]
1279027
1279102
+
Arg
TCT
-
¡û
>C231030471
CP017275
Bacillota
Latilactobacillus sakei TMW 1.1398 [CP017275]
633395
633320
-
Arg
TCT
-
¡û
>C231030534
CP017566
Bacillota
Latilactobacillus sakei TMW 1.114 [CP017566]
668311
668236
-
Arg
TCT
-
¡û
>C231030597
CP017568
Bacillota
Latilactobacillus sakei TMW 1.417 [CP017568]
654745
654670
-
Arg
TCT
-
¡û
>C231030660
CP017570
Bacillota
Latilactobacillus sakei TMW 1.578 [CP017570]
668305
668230
-
Arg
TCT
-
¡û
>C231146126
CP076099
Bacillota
Latilactobacillus curvatus SPC-SNU 70-3 [CP076099]
1332825
1332752
-
Arg
TCT
-
¡û
>C231413073
CP099485
Bacillota
Latilactobacillus sakei WiKim0095 [CP099485]
675945
675870
-
Arg
TCT
-
¡û
>C231547893
CP113247
Bacillota
Latilactobacillus sakei CNSC001WB [CP113247]
774759
774684
-
Arg
TCT
-
¡û
>C231572830
CP116016
Bacillota
Latilactobacillus curvatus SRCM217410 [CP116016]
1333147
1333074
-
Arg
TCT
-
¡û
>C231599763
CP117683
Bacillota
Latilactobacillus curvatus CACC879 [CP117683]
500997
500924
-
Arg
TCT
-
¡û
>C231649418
CP122959
Bacillota
Latilactobacillus sakei HUP1 [CP122959]
755374
755299
-
Arg
TCT
-
¡û
>W2110777384
VSTE01000001
Bacillota
Latilactobacillus sakei E13G [VSTE]
599911
599986
+
Arg
TCT
[ENA]
¡û
>C241065260
CP042389
Bacillota
Latilactobacillus curvatus CBA3617 [CP042389]
1210038
1210111
+
Arg
TCT
-
¡û
>C241090855
CP045007
Bacillota
Latilactobacillus graminis LG542 [CP045007]
1287989
1287916
-
Arg
TCT
-
¡û
>C241104949
CP046037
Bacillota
Latilactobacillus sakei CBA3614 [CP046037]
1441279
1441204
-
Arg
TCT
-
¡û
>C241127891
CP048116
Bacillota
Latilactobacillus sakei MBEL1397 [CP048116]
1716544
1716469
-
Arg
TCT
-
¡û
>C241178969
CP059697
Bacillota
Latilactobacillus sakei CBA3635 [CP059697]
1643974
1644049
+
Arg
TCT
-
¡û
>C241248503
CP123581
Bacillota
Latilactobacillus curvatus ZHA1 [CP123581]
1354932
1354859
-
Arg
TCT
-
¡û
>C241367535
CP141812
Bacillota
Latilactobacillus curvatus K285 [CP141812]
590664
590737
+
Arg
TCT
-
¡û
>WENV11100322
AEKF01000069
Food metagenome, Jonggazip commercial cabbage kimchi
15501
15426
-
Arg
TCT
[ENA]
¡û
>W1511344706
JRFY01000024
Bacillota
Latilactobacillus sakei wikim 22 [JRFY]
149040
148965
-
Arg
TCT
[ENA]
¡û
>W1511402271
JTJV01000006
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
64558
64485
-
Arg
TCT
[ENA]
¡û
>C161093459
CP016028
Bacillota
Latilactobacillus curvatus FBA2 [CP016028]
661040
661113
+
Arg
TCT
-
¡û
>C161100183
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
1810688
1810615
-
Arg
TCT
[Ensembl]
¡û
>W121008300
AGBU01000016
Bacillota
Latilactobacillus curvatus CRL 705 [AGBU]
8227
8154
-
Arg
TCT
[ENA]
¡û
>W1610031723
AYZB01000005
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
46849
46922
+
Arg
TCT
[ENA]
¡û
>W1610034074
AZDL01000025
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
21619
21692
+
Arg
TCT
[ENA]
¡û
>W1610034151
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
68758
68683
-
Arg
TCT
[ENA]
¡û
>W1610036384
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
75208
75133
-
Arg
TCT
[ENA]
¡û
>W1610045565
BBBQ01000038
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
6204
6277
+
Arg
TCT
[ENA]
¡û
>W1610909537
LSFF01000005
Bacillota
Latilactobacillus sakei [LSFF]
87237
87312
+
Arg
TCT
[ENA]
¡û
>W1710028650
AYZB01000005
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
46849
46922
+
Arg
TCT
[ENA]
¡û
>W1710031201
AZDL01000025
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
21619
21692
+
Arg
TCT
[ENA]
¡û
>W1710031278
AZDN01000001
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
68758
68683
-
Arg
TCT
[ENA]
¡û
>W1710033423
AZFG01000049
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
75208
75133
-
Arg
TCT
[ENA]
¡û
>W1710042406
BBBQ01000038
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [BBBQ]
6204
6277
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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