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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159828 (44 seq.)
>W1711339813
MCAP01000016
Gammaproteobacteria
Salinicola sp. MIT1003 [MCAP]
65818
65894
+
Val
CAC
[ENA]
¡û
>W1711509612
MKZT01000004
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [MKZT]
35961
36037
+
Val
CAC
[ENA]
¡û
>W1711689023
MSDQ01000076
Gammaproteobacteria
Chromohalobacter japonicus [MSDQ]
65
141
+
Val
CAC
[ENA]
¡û
>W1712082095
NHOU01000003
Gammaproteobacteria
Salinicola salarius [NHOU]
178904
178828
-
Val
CAC
[ENA]
¡û
>W131180815
ARNK01000054
Gammaproteobacteria
Kushneria aurantia DSM 21353 [ARNK]
21065
20989
-
Val
CAC
[ENA]
¡û
>C006953
CP000285
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [CP000285]
986339
986415
+
Val
CAC
[Ensembl]
¡û
>WENV170015139
AZIE01002546
[AZIE] marine sediment metagenome; sample MGS-MCh from oil contaminated site at the lagoon of Mar Chica, located in the north-west
2472
2396
-
Val
CAC
[ENA]
¡û
>WENV170176176
CEOS01048577
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
38
114
+
Val
CAC
[ENA]
¡û
>W09102572
AAHZ01000024
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
379
455
+
Val
CAC
[ENA]
¡û
>C181084604
CP023559
Gammaproteobacteria
Salinicola tamaricis F01 [CP023559]
768729
768653
-
Val
CAC
-
¡û
>W141754526
JNVT01000098
Gammaproteobacteria
Gammaproteobacteria bacterium MFB021 [JNVT]
41652
41728
+
Val
CAC
[ENA]
¡û
>W1910840493
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
1147251
1147327
+
Val
CAC
[ENA]
¡û
>W1911495791
OBQJ01000004
Gammaproteobacteria
Chromohalobacter canadensis USBA 855 [OBQJ]
276462
276386
-
Val
CAC
[ENA]
¡û
>W1911747124
QWBW01000053
Gammaproteobacteria
Halomonas sp. 362.1 [QWBW]
10654
10730
+
Val
CAC
[ENA]
¡û
>W1810444056
PZJK01000006
Gammaproteobacteria
Salinicola sp. RZ23 [PZJK]
229378
229302
-
Val
CAC
[ENA]
¡û
>W1810444312
PZJO01000005
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
57939
58015
+
Val
CAC
[ENA]
¡û
>W1810444342
PZJP01000003
Gammaproteobacteria
Salinicola aestuarinus CPA62 [PZJP]
223475
223399
-
Val
CAC
[ENA]
¡û
>W1810444630
PZJT01000015
Gammaproteobacteria
Salinicola salarius DSM 18044 [PZJT]
66902
66978
+
Val
CAC
[ENA]
¡û
>W1810444692
PZJU01000024
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
37282
37206
-
Val
CAC
[ENA]
¡û
>W1810444750
PZJV01000004
Gammaproteobacteria
Salinicola halophilus CECT 5903 [PZJV]
11159
11083
-
Val
CAC
[ENA]
¡û
>W1810444795
PZJW01000005
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
230197
230121
-
Val
CAC
[ENA]
¡û
>W1810609441
QGTY01000006
Gammaproteobacteria
Chromohalobacter salexigens 40a_TX [QGTY]
108548
108472
-
Val
CAC
[ENA]
¡û
>W2010595633
JABEVP010000002
Gammaproteobacteria
Chromohalobacter salexigens KG13 [JABEVP]
97059
97135
+
Val
CAC
[ENA]
¡û
>W2010930580
MZZK01000001
Gammaproteobacteria
Chromohalobacter salexigens ANJ 207 [MZZK]
1147251
1147327
+
Val
CAC
[ENA]
¡û
>W2011156695
OBQJ01000004
Gammaproteobacteria
Chromohalobacter canadensis USBA 855 [OBQJ]
276462
276386
-
Val
CAC
[ENA]
¡û
>W2011237706
QEQS01000003
Gammaproteobacteria
Chromohalobacter salexigens MP25462 [QEQS]
208998
208922
-
Val
CAC
[ENA]
¡û
>W2011315736
QWBW01000053
Gammaproteobacteria
Halomonas sp. 362.1 [QWBW]
10654
10730
+
Val
CAC
[ENA]
¡û
>W2011373780
RBIN01000002
Gammaproteobacteria
Kushneria sinocarnis DSM 23229 [RBIN]
111718
111642
-
Val
CAC
[ENA]
¡û
>W2011655293
SOBR01000002
Gammaproteobacteria
Chromohalobacter marismortui DSM 6770 [SOBR]
279502
279426
-
Val
CAC
[ENA]
¡û
>W2011658608
SOEC01000011
Gammaproteobacteria
Halomonas xianhensis 6_TX [SOEC]
70342
70266
-
Val
CAC
[ENA]
¡û
>W2012141848
VTPX01000013
Gammaproteobacteria
Salinicola sp. L3 [VTPX]
59924
60000
+
Val
CAC
[ENA]
¡û
>W2110050319
BMZI01000003
Gammaproteobacteria
Salinicola rhizosphaerae KCTC 32998 [BMZI]
220357
220281
-
Val
CAC
[ENA]
¡û
>W2110508853
JAFLEN010000004
Gammaproteobacteria
Salinicola sp. DM10 [JAFLEN]
224852
224776
-
Val
CAC
[ENA]
¡û
>W2110579233
JAGXFE010000001
Gammaproteobacteria
Halomonas coralii R2A 31.J [JAGXFE]
3201999
3202075
+
Val
CAC
[ENA]
¡û
>W2110579325
JAGXFF010000005
Gammaproteobacteria
Halomonas coralii MOD 31.J [JAGXFF]
216690
216614
-
Val
CAC
[ENA]
¡û
>W2110694283
JAIQWZ010000004
Gammaproteobacteria
Chromohalobacter salexigens voya40th042 [JAIQWZ]
212444
212368
-
Val
CAC
[ENA]
¡û
>W1510072043
CDGZ01000013
Gammaproteobacteria
Chromohalobacter japonicus CJ [CDGZ]
922810
922734
-
Val
CAC
[ENA]
¡û
>C241079413
CP043420
Gammaproteobacteria
Kushneria phosphatilytica YCWA18 [CP043420]
1127111
1127187
+
Val
CAC
-
¡û
>C241354618
CP140151
Gammaproteobacteria
Chromohalobacter canadensis ATCC 43984 [CP140151]
2506097
2506173
+
Val
CAC
-
¡û
>C241355332
CP140261
Gammaproteobacteria
Salinicola sp. LHM [CP140261]
3448915
3448839
-
Val
CAC
-
¡û
>W1511334708
JQNW01000001
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
987390
987314
-
Val
CAC
[ENA]
¡û
>C161085591
CP015243
Gammaproteobacteria
Halotalea alkalilenta IHB B 13600 [CP015243]
3580232
3580156
-
Val
CAC
[Ensembl]
¡û
>W1710563799
FOPY01000012
Gammaproteobacteria
Halomonas xianhensis [FOPY]
70972
70896
-
Val
CAC
[ENA]
¡û
>W1710582915
FQUJ01000003
Gammaproteobacteria
Halomonas ilicicola DSM 19980 [FQUJ]
157560
157484
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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